PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014509-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 499aa    MW: 56682.2 Da    PI: 6.611
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014509-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.2e-14221041298
                      HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       s++l lp +f++++ g+++++   +++e+  + + W+v +  + +++r+++++GW +Fv+a+ L++g f++F+++++s f  +v+++ 
  AHYPO_014509-RA  22 YSKQLQLPEDFTKNMdGYVPHR---IIIESeVTKKCWRVDVE-EDGDRRMYFRGGWADFVEAHSLEAGNFLLFEYEEQSIF--LVRIYG 104
                      456789******8887777655...99999566799*****4.444445899***********************987888..888876 PP
2B342.71e-132002771496
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++l++pk      g+k +++ +lt++d +g+sW+vkl   +++gr ++++GWk+F  +n++  gD + Fk++ ++    +v+v
  AHYPO_014509-RA 200 NQLTVPKVIS--LGKKLPSKDQLTFQDANGNSWTVKLA-HRRDGRALFSTGWKDFLADNKVSPGDKLSFKFVTDEL--IHVQV 277
                      4455554443..3444445668***************6.55556789999********************875433..45655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-188108IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1810108IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.60611106IPR003340B3 DNA binding domain
CDDcd100172.74E-1313103No hitNo description
SMARTSM010196.5E-1614106IPR003340B3 DNA binding domain
PfamPF023628.9E-1221104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-17181280IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-16181279IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-12186279No hitNo description
PROSITE profilePS5086312.999187281IPR003340B3 DNA binding domain
SMARTSM010191.4E-9187281IPR003340B3 DNA binding domain
PfamPF023625.1E-11200270IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392331425IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-15332423IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-13333423IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0033341425IPR003340B3 DNA binding domain
CDDcd100176.55E-7346423No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MGNKRERSNK GASFIKVLGR EYSKQLQLPE DFTKNMDGYV PHRIIIESEV TKKCWRVDVE  60
EDGDRRMYFR GGWADFVEAH SLEAGNFLLF EYEEQSIFLV RIYGRNGCER TMLVESTKGL  120
RKPDNTADDE TVEESEAVES EPESVECWQR KTRSLAPRKC IYKPQQAIPR SYTKSCRVSV  180
SQNALSFSVT MHKYKKHQFN QLTVPKVISL GKKLPSKDQL TFQDANGNSW TVKLAHRRDG  240
RALFSTGWKD FLADNKVSPG DKLSFKFVTD ELIHVQVTKT SKVKHRSDEP DEPSELECKE  300
DQPSSIAPND NNNAFETPTT KKKIISCVSG KSFSFVWRMS IARTYLHMPI QVVRAQNLMK  360
KDILVLRDPE TKCWPVEVKK LSGNRVALAK GWVEFWKGYG LTNGDNLTFD FVSENLIQVS  420
INRVKRLVEP DVITYLDAKH DNEEAAGIET EAVATREETN AAIATRNEFS VEIEPEDVMT  480
EDGADAIVEP EVGIGCKI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666269.10.0PREDICTED: B3 domain-containing protein REM16-like
TrEMBLA0A0J8B8P30.0A0A0J8B8P3_BETVU; Uncharacterized protein
STRINGXP_010666269.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.16e-18B3 family protein