PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_014346-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 166aa MW: 19475.4 Da PI: 8.8828 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 48.2 | 1.4e-15 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 ienk r vt +kR ng+l K ELS+LC+++v+ ii+ + AHYPO_014346-RA 10 YIENKNTRRVTCIKRCNGLLNKTRELSILCGVDVCTIIYHPY 51 59************************************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 16.54 | 1 | 48 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.06E-19 | 1 | 78 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-19 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.53E-21 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 4.7E-16 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.9E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MEKKKLKLQY IENKNTRRVT CIKRCNGLLN KTRELSILCG VDVCTIIYHP YSDVAVTWPE 60 SEQKIKQIIF EFENKQNNSK SDRQFDQKSY LTQYVKKSED KLNKIREKNR ELDMENIATD 120 LLNGKPIEDV LFDDLNDLLT VINSKMNIIQ HRLKLLHENT TNNSL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010675118.1 | 3e-50 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
STRING | XP_010675118.1 | 1e-49 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27960.1 | 1e-25 | AGAMOUS-like 90 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_014346-RA |