PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013998-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 352aa MW: 39376.1 Da PI: 7.8491

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013998-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.3	1.7e-54	28	155	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yLk+kv++ +l++ ++i+evd+yk++Pw+Lp+k+ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vls AHYPO_013998-RA 28 LPPGFRFHPTDEELVVHYLKRKVQSAPLPV-SIIAEVDLYKFDPWELPAKAVFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLS 120 79**************************.89***********8777899*********************************** PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kk Lvfy+g+ p+g kt+W+mheyrl AHYPO_013998-RA 121 TgSNQKVGVKKALVFYRGKPPRGIKTNWIMHEYRL 155 977788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-65	24	191	IPR003441	NAC domain
PROSITE profile	PS51005	62.663	28	191	IPR003441	NAC domain
Pfam	PF02365	8.0E-29	29	155	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009753	Biological Process	response to jasmonic acid
GO:0045995	Biological Process	regulation of embryonic development
GO:0048317	Biological Process	seed morphogenesis
GO:0080060	Biological Process	integument development
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MDTTHSPGSG GSQNPPEQQL QQPTQPQLPP GFRFHPTDEE LVVHYLKRKV QSAPLPVSII 60 AEVDLYKFDP WELPAKAVFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS 120 TGSNQKVGVK KALVFYRGKP PRGIKTNWIM HEYRLLDHNK SHNKPPGYDH PNRKGGSLRL 180 DDWVLCRIYK KNNTSRPMDH EREDSMDDMM MMGPMIPSST NNIVHHDASS LNYGSILDNT 240 HVHQNGIFDT IMGSGHLLDP RLSSPPPPLS LKRSLPSLYW GVDNDGGGGD CIDSPSKRLS 300 IQQMNIDDNV NINGESEARS DHQGINLLNQ QSSMLGNLSS FPLPGLNWYN S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MDTTHSPGSG GSQNPPEQQL QQPTQPQLPP GFRFHPTDEE LVVHYLKRKV QSAPLPVSII  60
AEVDLYKFDP WELPAKAVFG EQEWYFFSPR DRKYPNGARP NRAATSGYWK ATGTDKPVLS  120
TGSNQKVGVK KALVFYRGKP PRGIKTNWIM HEYRLLDHNK SHNKPPGYDH PNRKGGSLRL  180
DDWVLCRIYK KNNTSRPMDH EREDSMDDMM MMGPMIPSST NNIVHHDASS LNYGSILDNT  240
HVHQNGIFDT IMGSGHLLDP RLSSPPPPLS LKRSLPSLYW GVDNDGGGGD CIDSPSKRLS  300
IQQMNIDDNV NINGESEARS DHQGINLLNQ QSSMLGNLSS FPLPGLNWYN S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	8e-77	24	196	16	173	NAC domain-containing protein 19
3swm_B	8e-77	24	196	16	173	NAC domain-containing protein 19
3swm_C	8e-77	24	196	16	173	NAC domain-containing protein 19
3swm_D	8e-77	24	196	16	173	NAC domain-containing protein 19
3swp_A	8e-77	24	196	16	173	NAC domain-containing protein 19
3swp_B	8e-77	24	196	16	173	NAC domain-containing protein 19
3swp_C	8e-77	24	196	16	173	NAC domain-containing protein 19
3swp_D	8e-77	24	196	16	173	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00361	DAP	Transfer from AT3G15510	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021864744.1	1e-139	NAC transcription factor 56
Swissprot	Q9LD44	1e-108	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A0K9Q8A9	1e-136	A0A0K9Q8A9_SPIOL; Uncharacterized protein (Fragment)
STRING	evm.model.supercontig_80.94	1e-130	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	3e-99	NAC domain containing protein 2

Link Out ? help Back to Top
Phytozome	AHYPO_013998-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]