PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013919-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

HD-ZIP

Protein Properties

Length: 723aa MW: 79342.9 Da PI: 5.4373

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013919-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.4	2.8e-19	61	116	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r+eL+++l L+ qVk+WFqN+R+++k AHYPO_013919-RA 61 KKRYHRHTQHQIQEMENFFKECPHPDDKQRKELSRRLALEPLQVKFWFQNKRTQMK 116 688999***********************************************998 PP
2	START	212	2.2e-66	254	474	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela +a++el+++a+++ep+Wv s+ e++n++e+ ++f+++ + ++ea+r+s+vv+m++++l e+l+d++ qW+ + +a+t AHYPO_013919-RA 254 ELAVAAMEELIQMAQSGEPLWVPSPdnstEILNEEEYFRSFPRGIGpmqlgLKSEASRDSAVVIMNHMNLIEILMDVN-QWSCVFSgivsRAMT 346 57899************************************999****************************.*********** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168 l+v+s+g galq+m+ae+q++splvp R+ fvRy+++ + +wv+vdvS+d ++ p + R++++pSg+li++++ng+skvtwve AHYPO_013919-RA 347 LDVLSTGvagnynGALQVMTAEFQVPSPLVPtRENFFVRYCKKNVDNSWVVVDVSLDGLRPSP----IPRCRRRPSGCLIQELPNGYSKVTWVE 436 *********************************************************99....6********************** PP -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 hv+++++ +h+++r lv+sgla+gak+wv+tl+ qce+ AHYPO_013919-RA 437 HVEVDDQAVHNIYRALVNSGLAFGAKRWVSTLDMQCER 474 **********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.46E-18	48	118	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-20	49	116	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.487	58	118	IPR001356	Homeobox domain
SMART	SM00389	5.4E-17	59	122	IPR001356	Homeobox domain
Pfam	PF00046	7.3E-17	61	116	IPR001356	Homeobox domain
CDD	cd00086	1.08E-17	61	119	No hit	No description
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.378	245	477	IPR002913	START domain
SuperFamily	SSF55961	6.99E-36	246	476	No hit	No description
CDD	cd08875	1.22E-124	249	473	No hit	No description
SMART	SM00234	8.0E-71	254	474	IPR002913	START domain
Pfam	PF01852	3.3E-55	255	474	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.8E-5	350	468	IPR023393	START-like domain
SuperFamily	SSF55961	1.26E-22	495	714	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
MYQPNMFETH HQLLDMGGGH KNPDSDLGKM RDDEFESSRS ATENLEGLSG DDQDPNQRPK 60 KKRYHRHTQH QIQEMENFFK ECPHPDDKQR KELSRRLALE PLQVKFWFQN KRTQMKAQHE 120 RSENQQLRSE NEKLRADNIR YKEALNNATC PNCGGPAAIG EMSFDEQQLR IENARLREEI 180 DRISGIAAKY VGKPLVTFPH LQNQGLHSRS SLDLGVGSFG APSSMVSDIY GGSAGDLLRS 240 VAPLTEADKP MIIELAVAAM EELIQMAQSG EPLWVPSPDN STEILNEEEY FRSFPRGIGP 300 MQLGLKSEAS RDSAVVIMNH MNLIEILMDV NQWSCVFSGI VSRAMTLDVL STGVAGNYNG 360 ALQVMTAEFQ VPSPLVPTRE NFFVRYCKKN VDNSWVVVDV SLDGLRPSPI PRCRRRPSGC 420 LIQELPNGYS KVTWVEHVEV DDQAVHNIYR ALVNSGLAFG AKRWVSTLDM QCERLASVMA 480 NNIPLTEGGV ITSAEGRKSM LKLAERMVMS FCAGVGASTA HTWTTLSGSG VDDVRVMTRK 540 SMDDPGRPPG IVLSAATSFW MPVSPKRVFD FLRDENSRSE WDILSNGGLV QEMAHIANGR 600 DPGNYSANSS QSNMLILQES TTDATGSYVI YAPVDIVAMN VVLNGGDPDY VALLPSGFAI 660 LPDGSVGSMD LGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAAVAGD 720 TA*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

MYQPNMFETH HQLLDMGGGH KNPDSDLGKM RDDEFESSRS ATENLEGLSG DDQDPNQRPK  60
KKRYHRHTQH QIQEMENFFK ECPHPDDKQR KELSRRLALE PLQVKFWFQN KRTQMKAQHE  120
RSENQQLRSE NEKLRADNIR YKEALNNATC PNCGGPAAIG EMSFDEQQLR IENARLREEI  180
DRISGIAAKY VGKPLVTFPH LQNQGLHSRS SLDLGVGSFG APSSMVSDIY GGSAGDLLRS  240
VAPLTEADKP MIIELAVAAM EELIQMAQSG EPLWVPSPDN STEILNEEEY FRSFPRGIGP  300
MQLGLKSEAS RDSAVVIMNH MNLIEILMDV NQWSCVFSGI VSRAMTLDVL STGVAGNYNG  360
ALQVMTAEFQ VPSPLVPTRE NFFVRYCKKN VDNSWVVVDV SLDGLRPSPI PRCRRRPSGC  420
LIQELPNGYS KVTWVEHVEV DDQAVHNIYR ALVNSGLAFG AKRWVSTLDM QCERLASVMA  480
NNIPLTEGGV ITSAEGRKSM LKLAERMVMS FCAGVGASTA HTWTTLSGSG VDDVRVMTRK  540
SMDDPGRPPG IVLSAATSFW MPVSPKRVFD FLRDENSRSE WDILSNGGLV QEMAHIANGR  600
DPGNYSANSS QSNMLILQES TTDATGSYVI YAPVDIVAMN VVLNGGDPDY VALLPSGFAI  660
LPDGSVGSMD LGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV ERIKAAVAGD  720
TA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021719656.1	0.0	homeobox-leucine zipper protein PROTODERMAL FACTOR 2-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A0K9R0U5	0.0	A0A0K9R0U5_SPIOL; Uncharacterized protein
STRING	XP_010665524.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_013919-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]