PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013860-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 435aa    MW: 49167.2 Da    PI: 8.4032
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013860-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.81.2e-102572951854
                      HHHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  18 lFek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      lFe   ++yps +++  LA+k+gL+ +qV++WF N R +
  AHYPO_013860-RA 257 LFEHflHPYPSDTDKHMLAQKTGLSRSQVSNWFTNARVR 295
                      5665569******************************98 PP
2BELL76.54e-251412021172
             BELL  11 kLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       L+sll+eV+krYk y++q+q  + sFe vaglg+a+p+   A ka+ rhF+cLk+ai ++i
  AHYPO_013860-RA 141 NLVSLLHEVYKRYKLYCQQMQSAVTSFESVAGLGNATPFLCYAVKAMFRHFQCLKNAILDHI 202
                      69********************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-2380200IPR006563POX domain
PfamPF075261.4E-2486198IPR006563POX domain
PROSITE profilePS5007112.487236299IPR001356Homeobox domain
SMARTSM003895.7E-11239303IPR001356Homeobox domain
CDDcd000869.59E-13239300No hitNo description
SuperFamilySSF466891.07E-17241305IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-28242304IPR009057Homeodomain-like
PfamPF059207.1E-18256295IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDETFSPFHV PQQSRRLKLR YHQNDDVEIV VPNHHFLSPL QLQPTSSSSS VDLLMASTNL  60
SLSSATHSRT YLPSPMGPFT GYASILGRSR FLRPAQELLE EFSRASGVSL EKQSNYNVLE  120
GSGILFSDDD DDVSLRCSNP NLVSLLHEVY KRYKLYCQQM QSAVTSFESV AGLGNATPFL  180
CYAVKAMFRH FQCLKNAILD HIRVTSKAFT SVDTRKDRTS ASCSDDKGSA SNFLQHPVWR  240
SQRGFPDKAV AVLRNWLFEH FLHPYPSDTD KHMLAQKTGL SRSQVSNWFT NARVRLWKPM  300
VEEMHALEKK TQCSKAAEDS QNFFDLSSNQ QMSLHAQLPE KDFQILYSHR ENQDNTTSQC  360
KRSRIEAFPS RIDHGKQEFS LLCNRLPSNQ VLDVGASQTD ARLSHSSIAN NQNNTPGLSW  420
SSHGQIVPFW LAKQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-16245303563Homeobox protein Meis2
4xrm_B3e-16245303563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021769074.10.0BEL1-like homeodomain protein 9
TrEMBLA0A0K9RBJ40.0A0A0K9RBJ4_SPIOL; Uncharacterized protein
STRINGXP_010687910.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-68BEL1-like homeodomain 8