PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013738-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 303aa MW: 33478 Da PI: 6.9507

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013738-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.6	9.5e-07	186	240	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr +r NR +A+rsR e+ L +v+ L+ +++ L +++lk ++a+l +++ AHYPO_013738-RA 186 KRVKRILANRQSAQRSR----SEVSALSPRVAFLDHQRMILNGDNSTLKAKIAALAQDK 240 999***********9....59****************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	5.5E-4	186	238	No hit	No description
CDD	cd14703	5.82E-9	187	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MAQLPPKVPN VMHNDYHNQQ WQGFLQQAQN PSTPWVDEFM EFSAIRRGTH RRTMSDSSVA 60 FLEAGPPVPC VSGCGSFRQP EGDGGCKTNN DDQYDQFDDE QLIMSMFGSE LGKCHSNLSS 120 TSDHNSTNEV LIMTTTTATK EDEKEEEAES PSKSKKAKGK GQGQGQGAGE GSRSKGGNVA 180 AEVDPKRVKR ILANRQSAQR SRSEVSALSP RVAFLDHQRM ILNGDNSTLK AKIAALAQDK 240 IFKDAHQEAM KREIERLRQV YYQQNISNTE NIIRPPSSSS LQQINPSQQT DNTVHENKQL 300 NG*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the sporophytic control of cell wall patterning and gametophytic control of pollen development. May play a role in the control of metabolic pathways regulating cellular transport and lipid metabolism. {ECO:0000269\|PubMed:17719007, ECO:0000269\|PubMed:19449183}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021716211.1	2e-98	basic leucine zipper 34-like
Swissprot	F4IN23	9e-65	BZP34_ARATH; Basic leucine zipper 34
TrEMBL	A0A0K9RE90	2e-87	A0A0K9RE90_SPIOL; Uncharacterized protein
STRING	XP_010689754.1	2e-87	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42380.1	9e-42	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_013738-RA

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]