PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013727-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 338aa    MW: 37624.4 Da    PI: 9.6994
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013727-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05828323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++Cgk F r  nL+ H r H
  AHYPO_013727-RA  8 CEICGKGFQRDQNLQLHRRGH 28
                     *******************88 PP
2zf-C2H213.60.000282104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H +t+
  AHYPO_013727-RA  82 WKCEKCKKRYAVQSDWKAHSKTC 104
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.7E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-6528No hitNo description
SMARTSM003550.076628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.41E-677102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MTTNRFLCEI CGKGFQRDQN LQLHRRGHNL PWKLKQRTSK EPRKRVYICP EKTCVHHHPS  60
RALGDLTGIK KHFCRKHGEK NWKCEKCKKR YAVQSDWKAH SKTCGTREYK CHCGTIFSRA  120
FCDALAEETA RMNAANAHFT LNAAIMGSNL RPSIAMAQHF SSIFKPLTSS TKDKATLNNP  180
HNPNQKGHFP FLFPTNNTQL PQNLGTNQNP NSCPIMSATG LLQKASQIGL TSSTLIDNRD  240
AFFPGNFGLI FKGNNDILDD NGCGGSFHGS VDGSGDGSID DLSNVTTMYN VTNNKRQKLF  300
NDNYVDNNNY TNVSIVHGGV GGQTRDFLGV GSQPVYQP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-2578134367Zinc finger protein JACKDAW
5b3h_F1e-2578134367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021733370.11e-150zinc finger protein NUTCRACKER-like isoform X2
SwissprotQ9FFH35e-92IDD8_ARATH; Zinc finger protein NUTCRACKER
TrEMBLA0A218X1I31e-107A0A218X1I3_PUNGR; Uncharacterized protein
STRINGXP_010689779.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.24e-93C2H2 family protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  2. Long Y, et al.
    In vivo FRET-FLIM reveals cell-type-specific protein interactions in Arabidopsis roots.
    Nature, 2017. 548(7665): p. 97-102
    [PMID:28746306]