PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013723-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 1711aa    MW: 191381 Da    PI: 4.9003
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013723-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.73.4e-1745101157
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      + kR   t+ qle Le++++ ++yps + r+eL++k++L++rq ++WF+ rR k++k
  AHYPO_013723-RA  45 KTKRIMKTPFQLELLEKAYQLDNYPSDSVRAELSAKTELSDRQLQMWFCHRRLKDRK 101
                      679999*************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.3E-1732101IPR009057Homeodomain-like
SuperFamilySSF466892.78E-1637104IPR009057Homeodomain-like
PROSITE profilePS5007116.00142102IPR001356Homeobox domain
SMARTSM003893.0E-1744106IPR001356Homeobox domain
CDDcd000869.86E-1445100No hitNo description
PfamPF000468.0E-1545101IPR001356Homeobox domain
PROSITE profilePS5082717.171560619IPR018501DDT domain
SMARTSM005711.8E-20560619IPR018501DDT domain
PfamPF027914.1E-17561616IPR018501DDT domain
PfamPF156125.8E-7921960IPR028942WHIM1 domain
PfamPF156132.4E-1311021174IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1711 aa     Download sequence    Send to blast
MEGNGIVEIE RGFDFDCVSV DFAMGGGSFD GEEKLLENGG GGERKTKRIM KTPFQLELLE  60
KAYQLDNYPS DSVRAELSAK TELSDRQLQM WFCHRRLKDR KGEKKTKKGE APPPATASVG  120
VAVAGTLPRL PPVGSVDDMF DDDLGNEHGS GSGSGSGSSP YGHMDPHRAY VGHPGGAVPR  180
TSGRGRYHEP SQSLIQYRAI AFVEAQLGEP LTEDSPALGI EFDPLPPGAF NAPIAITTAL  240
QKTSGRTYEA SSKKGRSRAL HEYQFLPEQP TVRSESYERV SQSHYYSSPS SRLGNKTPPL  300
SNGRSYIYGH EEVPVAYGGP NHIMLPTSED YEAVARKSPY LNMGTESPLN THLNSGRDSA  360
LVPPEMRVNL EEAAGSMERK RKFDESRVAK EMDAHEKKMR KDLERQDILR RKDMERQERE  420
RRKEEERLLR EKQREEERYQ REQRREMERM EKCLLKESAR AEKMKQKEEL RREKEAAKQK  480
AANDRAVARR LAKESTELIE DERLELMEIA VSRNNLKTIV SLDSETLQNL DSFKDMLGLF  540
PPKSVQLKKP FAIQPWLDSE ENVGNLLMVW RFLLTFADVL GLWPFTLDEF VQAFHDYDPR  600
LLGEIYVALL RTIIKDTGNP VGGHLQIVEG AYTWGFDIRS WQCNLSPLTW PEVLRQLALS  660
AGFGPKLKNR NVVELCSREE NEGNDCIDIV SNLRNGAAVE KAVSIMRERG YSNGRRSRHK  720
LTPGTVKFAA YHKSGLRDLT TSKTPEASIA AALSRDTKLF ERTAPSTYCV RSPYRKDPVD  780
AEAILSAARE KIRVFKSGLV NEVEADVDGM EVDDAEKDED SESDTAEDPE IDDLATVLTP  840
DKDANTPYDM NTCVPKVGSD NGSESLSHID DKTSNGVGTA YLESFKMHDN GCLVEESKDV  900
DGICLANNNS DHEDTDIDES CPGEAWVHGL MEGEFSNLSV EERLNALVAL VSVATEGNTI  960
SDVLEERLEA ATALKKQMWA EAQLDKRRLK EEYLMKTPYA SLVPNKTESN MMTSAADNGH  1020
MLALDEKEAM GNPAQQQKLI IDSHNDNNLH ADPHSEKNST TPNFVSGVDN AASQQSAYAT  1080
ERCRAQLKSY IGHKAEELYV YRSLPLGEDR RRNRYWQFIA SASCNDPGTG RLFVELGDGS  1140
WRLIDSEEDF DALLASLDVR GVRESHLHAM LRKIEFLFKE CGRRKQLGTS TDQHNMFSVK  1200
AEAYEVPSNP ENSAGTDSPS STVYPTNSEN PEPSSSFKID TGRNSIEIKS SLRRYKSFEE  1260
WMWQECLNPS ALRATKYGKK RCLELIRRCD SCRDIYFFED NHCPMCHKTY NAFDTTFDFS  1320
EHVAQCQEYR ADFEKSFRSL EYPPPRIRLL KAFLALVEVC IPPEALQPVL TLLEGAIKRD  1380
FLSSQFQTTG DLLASGNTVG YVVNDPSYFG NITILPWIPQ TTSAKIPSKY TGVRNVQEDE  1440
FAGVSGEVQP EEASLIDKGN DLGAIPLGVT RAQGGRVRTR GGKSQKSRVD SRGGKPNSIS  1500
VASNEKLDVL GGWSGGSIRG MRVHKRGRRS VRKRPKPVKK APAVPTTGMR SLPKPIIFDK  1560
SPSRFSGRDE WNGQESRQMM NVNEPSYSDR SNYDDDNNGQ ASGDEYDDMA IDDYAAVYNS  1620
RPNTHAREYN GDDGEYNVDD CDEEDDHDEV GDDGYRDEDA NGGEYEERYV DNGGYLNAES  1680
DEENGEEDGM GDGDQHGNYE SGSTDYSSDD *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010689786.10.0PREDICTED: homeobox-DDT domain protein RLT2 isoform X2
RefseqXP_019107341.10.0PREDICTED: homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A0K9RUY60.0A0A0K9RUY6_SPIOL; Uncharacterized protein
STRINGXP_010689786.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator