PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_013723-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 1711aa MW: 191381 Da PI: 4.9003 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.7 | 3.4e-17 | 45 | 101 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t+ qle Le++++ ++yps + r+eL++k++L++rq ++WF+ rR k++k AHYPO_013723-RA 45 KTKRIMKTPFQLELLEKAYQLDNYPSDSVRAELSAKTELSDRQLQMWFCHRRLKDRK 101 679999*************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-17 | 32 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-16 | 37 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.001 | 42 | 102 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.0E-17 | 44 | 106 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.86E-14 | 45 | 100 | No hit | No description |
Pfam | PF00046 | 8.0E-15 | 45 | 101 | IPR001356 | Homeobox domain |
PROSITE profile | PS50827 | 17.171 | 560 | 619 | IPR018501 | DDT domain |
SMART | SM00571 | 1.8E-20 | 560 | 619 | IPR018501 | DDT domain |
Pfam | PF02791 | 4.1E-17 | 561 | 616 | IPR018501 | DDT domain |
Pfam | PF15612 | 5.8E-7 | 921 | 960 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 2.4E-13 | 1102 | 1174 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1711 aa Download sequence Send to blast |
MEGNGIVEIE RGFDFDCVSV DFAMGGGSFD GEEKLLENGG GGERKTKRIM KTPFQLELLE 60 KAYQLDNYPS DSVRAELSAK TELSDRQLQM WFCHRRLKDR KGEKKTKKGE APPPATASVG 120 VAVAGTLPRL PPVGSVDDMF DDDLGNEHGS GSGSGSGSSP YGHMDPHRAY VGHPGGAVPR 180 TSGRGRYHEP SQSLIQYRAI AFVEAQLGEP LTEDSPALGI EFDPLPPGAF NAPIAITTAL 240 QKTSGRTYEA SSKKGRSRAL HEYQFLPEQP TVRSESYERV SQSHYYSSPS SRLGNKTPPL 300 SNGRSYIYGH EEVPVAYGGP NHIMLPTSED YEAVARKSPY LNMGTESPLN THLNSGRDSA 360 LVPPEMRVNL EEAAGSMERK RKFDESRVAK EMDAHEKKMR KDLERQDILR RKDMERQERE 420 RRKEEERLLR EKQREEERYQ REQRREMERM EKCLLKESAR AEKMKQKEEL RREKEAAKQK 480 AANDRAVARR LAKESTELIE DERLELMEIA VSRNNLKTIV SLDSETLQNL DSFKDMLGLF 540 PPKSVQLKKP FAIQPWLDSE ENVGNLLMVW RFLLTFADVL GLWPFTLDEF VQAFHDYDPR 600 LLGEIYVALL RTIIKDTGNP VGGHLQIVEG AYTWGFDIRS WQCNLSPLTW PEVLRQLALS 660 AGFGPKLKNR NVVELCSREE NEGNDCIDIV SNLRNGAAVE KAVSIMRERG YSNGRRSRHK 720 LTPGTVKFAA YHKSGLRDLT TSKTPEASIA AALSRDTKLF ERTAPSTYCV RSPYRKDPVD 780 AEAILSAARE KIRVFKSGLV NEVEADVDGM EVDDAEKDED SESDTAEDPE IDDLATVLTP 840 DKDANTPYDM NTCVPKVGSD NGSESLSHID DKTSNGVGTA YLESFKMHDN GCLVEESKDV 900 DGICLANNNS DHEDTDIDES CPGEAWVHGL MEGEFSNLSV EERLNALVAL VSVATEGNTI 960 SDVLEERLEA ATALKKQMWA EAQLDKRRLK EEYLMKTPYA SLVPNKTESN MMTSAADNGH 1020 MLALDEKEAM GNPAQQQKLI IDSHNDNNLH ADPHSEKNST TPNFVSGVDN AASQQSAYAT 1080 ERCRAQLKSY IGHKAEELYV YRSLPLGEDR RRNRYWQFIA SASCNDPGTG RLFVELGDGS 1140 WRLIDSEEDF DALLASLDVR GVRESHLHAM LRKIEFLFKE CGRRKQLGTS TDQHNMFSVK 1200 AEAYEVPSNP ENSAGTDSPS STVYPTNSEN PEPSSSFKID TGRNSIEIKS SLRRYKSFEE 1260 WMWQECLNPS ALRATKYGKK RCLELIRRCD SCRDIYFFED NHCPMCHKTY NAFDTTFDFS 1320 EHVAQCQEYR ADFEKSFRSL EYPPPRIRLL KAFLALVEVC IPPEALQPVL TLLEGAIKRD 1380 FLSSQFQTTG DLLASGNTVG YVVNDPSYFG NITILPWIPQ TTSAKIPSKY TGVRNVQEDE 1440 FAGVSGEVQP EEASLIDKGN DLGAIPLGVT RAQGGRVRTR GGKSQKSRVD SRGGKPNSIS 1500 VASNEKLDVL GGWSGGSIRG MRVHKRGRRS VRKRPKPVKK APAVPTTGMR SLPKPIIFDK 1560 SPSRFSGRDE WNGQESRQMM NVNEPSYSDR SNYDDDNNGQ ASGDEYDDMA IDDYAAVYNS 1620 RPNTHAREYN GDDGEYNVDD CDEEDDHDEV GDDGYRDEDA NGGEYEERYV DNGGYLNAES 1680 DEENGEEDGM GDGDQHGNYE SGSTDYSSDD * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010689786.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2 isoform X2 | ||||
Refseq | XP_019107341.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2 isoform X1 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A0K9RUY6 | 0.0 | A0A0K9RUY6_SPIOL; Uncharacterized protein | ||||
STRING | XP_010689786.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_013723-RA |