PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013721-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 313aa    MW: 35188.4 Da    PI: 6.5129
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013721-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.73.4e-10116142128
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAt 28 
                      k++++WtpeLH+rFv++veqL G +kA 
  AHYPO_013721-RA 116 KTKVEWTPELHRRFVQVVEQL-GVDKAK 142
                      6799*****************.999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-9113143IPR009057Homeodomain-like
SuperFamilySSF466892.69E-5114149IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MEGDFTMRSE EFLDCSEANL LDNIDFDDLF GVEFLHELSD LEMDPGLLPD LFNGYDEVDN  60
DDPRKEEIKI NKKTDSNSSS FSCQNNNRKN NNNNDNNNND NNSNSNNNNN NQAKRKTKVE  120
WTPELHRRFV QVVEQLGVDK AKYRSHRKHL LARETEAMHR TSSMGGGRGG GGGNMSPWYP  180
PTMGYPPMTN MHMQHPSFRP LHVWGHPQAR VPMPMWPKHL NRVGVAQVPV PGIPPHTMFK  240
PDQSLLPQPP PQSGSHSSID LRPSKESIDA AIGDVLAKPW QPLPIGLKPP SMDTVLVELQ  300
RQGIFKIPPS YA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172GGRGGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848304.12e-85transcription activator GLK1-like
TrEMBLA0A0K9RD605e-84A0A0K9RD60_SPIOL; Uncharacterized protein
STRINGXP_010689788.16e-84(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44190.18e-34GOLDEN2-like 2