PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_013514-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | DBB | ||||||||
Protein Properties | Length: 225aa MW: 24626.1 Da PI: 6.3783 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23 | 1.7e-07 | 4 | 33 | 5 | 34 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e +++fC ++ lC+ C ++ H AHYPO_013514-RA 4 LCDVCEGAAAIFFCAADEAALCRACDEKVH 33 7******99******************998 PP | |||||||
2 | zf-B_box | 27.8 | 5e-09 | 53 | 92 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 +kC+ +e+ ++ ++Ce +++ lC +C ++ H g H+ AHYPO_013514-RA 53 VPKCDICENAPAFFYCEIDGSSLCLQCDMAVHVGgkrtHR 92 589*****************************66666776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.5E-8 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.954 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.36E-6 | 3 | 33 | No hit | No description |
Pfam | PF00643 | 3.6E-6 | 3 | 34 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.5E-14 | 51 | 96 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.271 | 51 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 8.7E-7 | 53 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.86E-8 | 54 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MRTLCDVCEG AAAIFFCAAD EAALCRACDE KVHMCNKLAS RHIRVGLAAP TAVPKCDICE 60 NAPAFFYCEI DGSSLCLQCD MAVHVGGKRT HRRYLLLRQR AEFPGDKYGN GEHMGLQQVD 120 RMDVRREPNQ SPNATVTEKE KNHVVFVDGN VVPDAQMDNK MIDLNARPQR NMLQSSNNQG 180 MDDAPEANGD SASFVPCGML GYWRSHKPGG LFSGEMSIPL GLQC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021753490.1 | 1e-117 | B-box zinc finger protein 19-like isoform X2 | ||||
Swissprot | C0SVM5 | 7e-75 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0K9QIE5 | 1e-103 | A0A0K9QIE5_SPIOL; Uncharacterized protein | ||||
TrEMBL | A0A0K9QJY4 | 1e-103 | A0A0K9QJY4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690759.1 | 1e-113 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 2e-64 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_013514-RA |