PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_013476-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 254aa MW: 28768.9 Da PI: 7.0588 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.5e-32 | 72 | 125 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+vkgL+++hvkSHLQ+YR+ AHYPO_013476-RA 72 PRLRWTPDLHLCFVQAVERLGGQERATPKLVLQLMNVKGLSIAHVKSHLQMYRS 125 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.43 | 68 | 128 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-31 | 68 | 126 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.77E-15 | 69 | 126 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.9E-24 | 72 | 127 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-9 | 73 | 124 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MYEDEKEEDE EEEAKGEVDD NNSNINNNSN SNNNSNSKLN GSSLSSSTVE VGDKKGPTSS 60 GSVRPYNRSK TPRLRWTPDL HLCFVQAVER LGGQERATPK LVLQLMNVKG LSIAHVKSHL 120 QMYRSKKIDE SNQALNNQGI FIDGRDNIYD LSQLPMLQGY NNQRSSTFSL RYDDSSWRPY 180 QSNHIYAPYT IGTSTGSDMS RIRSNWITQQ THKQDPIIQT NASLLSCQFT NIRPIRESME 240 FNLAISPFPK IVTL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 8e-20 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-20 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-20 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-20 | 73 | 127 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-20 | 73 | 127 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021732658.1 | 1e-100 | two-component response regulator ARR1-like | ||||
TrEMBL | A0A0K9R1I5 | 3e-93 | A0A0K9R1I5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010693076.1 | 6e-84 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 6e-49 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_013476-RA |