PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013208-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 462aa    MW: 52605 Da    PI: 5.3028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013208-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS272.51.3e-83564572372
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilk 92 
                      ++lL++cA+a++++d++ aq++L+ l+++a pdgd++qRl+  f++AL  r ar ++ +  +l++++    n ++++++ l l  f++++P+++
  AHYPO_013208-RA  56 EQLLIHCAQAIENNDATPAQQILWVLNNIAPPDGDSNQRLTCAFLRALILRAAR-TPACKFILNSNTICGFNqVIHKFSLLDLanFVHLTPWHR 148
                      79***************************************************9.555555555444433222555555555588********* PP

             GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnv 180
                      f++ +aN+ Ilea+eg ++vHi+D+++++++Q p+L++++++R   ++pp++R+T+ +  ++     +  ++  +g +L +fA++ gv +ef++
  AHYPO_013208-RA 149 FGFTAANSVILEATEGRTAVHIVDLSVTHCMQIPTLIDSISNRYqgRQPPTVRLTVGALTHEIppmfDLVSYDDLGIKLINFARSRGVVLEFKA 242
                      *******************************************966679******877744448889999************************ PP

             GRAS 181 l..........vakrledl.....eleeLrvkp......gEalaVnlvlqlhrll.......desvsles...erdevLklvkslsPkvvvvve 243
                      +          v   l+++     +++ + +++      +E+l++n+++ +h+l        +   sl+     r+ + k+++sl P++vv+ve
  AHYPO_013208-RA 243 IpttpldgfasV---LDEVrtrqeQMKYIYINQnqnyeeEESLVINCQMTVHYLNhevdpedH---SLNGlmsMRTMFFKALRSLDPTIVVIVE 330
                      *99999995551...444422111333343333557777**************9944443322...332255599******************* PP

             GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                      +++d +s +++ r+ +al+y++  fd++++ lpres++r ++E+  + ++i+n++++ g+er+er+e  ++W +r++ea F+ v +  +a+ ++
  AHYPO_013208-RA 331 EDVDFTSRNLVGRLRSALNYFWIPFDTVDTFLPRESKQREWYEAD-ICWKIENIISNDGDERVERQEPRAQWAQRMMEAEFRGVGFVGEAMGEV 423
                      *********************************************.************************************************ PP

             GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                      k++l++++  g+  ++e++ lvl+Wk++++v+++a
  AHYPO_013208-RA 424 KSMLEEHA-TGWGSKKEEEDLVLTWKGHNVVFATA 457
                      ********.88899999999***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.55429440IPR005202Transcription factor GRAS
PfamPF035144.5E-8156457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMQFTQIPQF PSQNQLPLYQ TTTMMNRIRP WPGFPTSKPT LSPSNNHNLG DTNCMEQLLI  60
HCAQAIENND ATPAQQILWV LNNIAPPDGD SNQRLTCAFL RALILRAART PACKFILNSN  120
TICGFNQVIH KFSLLDLANF VHLTPWHRFG FTAANSVILE ATEGRTAVHI VDLSVTHCMQ  180
IPTLIDSISN RYQGRQPPTV RLTVGALTHE IPPMFDLVSY DDLGIKLINF ARSRGVVLEF  240
KAIPTTPLDG FASVLDEVRT RQEQMKYIYI NQNQNYEEEE SLVINCQMTV HYLNHEVDPE  300
DHSLNGLMSM RTMFFKALRS LDPTIVVIVE EDVDFTSRNL VGRLRSALNY FWIPFDTVDT  360
FLPRESKQRE WYEADICWKI ENIISNDGDE RVERQEPRAQ WAQRMMEAEF RGVGFVGEAM  420
GEVKSMLEEH ATGWGSKKEE EDLVLTWKGH NVVFATALVP S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-403546118421Protein SHORT-ROOT
5b3h_E3e-403546118421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010679612.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-154SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A0K9QIV00.0A0A0K9QIV0_SPIOL; Uncharacterized protein
STRINGXP_010679612.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-150GRAS family protein