PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013205-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 678aa MW: 78164.6 Da PI: 9.4383

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013205-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.4	2.7e-09	8	85	28	90
FAR1 28 itkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + ++ + Cs g r++ kk + +++r+ a trtgC+a+++ kk++ g +ev++ +l HnH+++ AHYPO_013205-RA 8 VNEKYYLCSAAGIRNTVKKVgketqshdtegiektKIRKERRVAITRTGCNACIRAKKNTFGLFEVIDHVLAHNHSMT 85 567889999999999988888999999999999766667778899******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-6	9	85	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-32	207	301	IPR018289	MULE transposase domain
Pfam	PF04434	2.6E-7	478	519	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.076	489	523	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 678 aa Download sequence Send to blast
MKQGTFDVNE KYYLCSAAGI RNTVKKVGKE TQSHDTEGIE KTKIRKERRV AITRTGCNAC 60 IRAKKNTFGL FEVIDHVLAH NHSMTRTQWN YRHRSERQMS DHKKEAIETM QLAGLQPMES 120 YRLLSAEAGG EYTIGHTVKD HLNFCHKLKM KKIDGGDVNS VIEQLDQKVS DNPDFFYRVR 180 LDEEGKICCI FWRDAMMLED YKIFGDVVVM DTTYKKNKYN LICALFVGIN NHWKNTMFAC 240 AFMGDETVES FVWLLNIFKK SMGGKCPVTI FTDQDAAMSN AIKKCFPGSR HRLCLWHISQ 300 NAVKRYGALK KDATFKKTFH KCLSGCSNKD EFEACWNSMI TTYKLENNKW FKRLYNLKEK 360 WATALSKDFF SAGILSSQRS ESSNRAVGFR ANYKTTLIEF FHIFEDTMRR RRRSEIDDEF 420 HCTKSVPKSH MPLIGLLKHA SEVYTETLFR DFENEFTHAM GTVVNQVHEP GTHGNKYQVT 480 FPGIEQSTHE VTYNVEAITC SCKTFEESGW LCYHIIRVLH LFSIVRIPEQ YIKSRWTKFA 540 KMGVWDKVDA ESKELGVISS YTPWRLQMAR KFYNLILNCH TNEDGRSYLE EKYKLMVVDI 600 NALLPKPVEV ANAIDAETAD VFPRPSVRDP NVLKTKGSSG KRINGAYDHY KRGSKNKKGK 660 GKAHEEFGSK TPNVRLI*

Sequence ? help Back to Top

Protein Sequence Length: 678 aa Download sequence Send to blast

MKQGTFDVNE KYYLCSAAGI RNTVKKVGKE TQSHDTEGIE KTKIRKERRV AITRTGCNAC  60
IRAKKNTFGL FEVIDHVLAH NHSMTRTQWN YRHRSERQMS DHKKEAIETM QLAGLQPMES  120
YRLLSAEAGG EYTIGHTVKD HLNFCHKLKM KKIDGGDVNS VIEQLDQKVS DNPDFFYRVR  180
LDEEGKICCI FWRDAMMLED YKIFGDVVVM DTTYKKNKYN LICALFVGIN NHWKNTMFAC  240
AFMGDETVES FVWLLNIFKK SMGGKCPVTI FTDQDAAMSN AIKKCFPGSR HRLCLWHISQ  300
NAVKRYGALK KDATFKKTFH KCLSGCSNKD EFEACWNSMI TTYKLENNKW FKRLYNLKEK  360
WATALSKDFF SAGILSSQRS ESSNRAVGFR ANYKTTLIEF FHIFEDTMRR RRRSEIDDEF  420
HCTKSVPKSH MPLIGLLKHA SEVYTETLFR DFENEFTHAM GTVVNQVHEP GTHGNKYQVT  480
FPGIEQSTHE VTYNVEAITC SCKTFEESGW LCYHIIRVLH LFSIVRIPEQ YIKSRWTKFA  540
KMGVWDKVDA ESKELGVISS YTPWRLQMAR KFYNLILNCH TNEDGRSYLE EKYKLMVVDI  600
NALLPKPVEV ANAIDAETAD VFPRPSVRDP NVLKTKGSSG KRINGAYDHY KRGSKNKKGK  660
GKAHEEFGSK TPNVRLI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021740411.1	0.0	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-98	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	AHYPO_013205-RA