PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013063-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 632aa    MW: 70849.8 Da    PI: 5.3372
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013063-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3634.7e-201499899
                     -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                       +l+s+rl +p kf+e+ g  k +   l+l+ +sg+ W+v l    +sg+ ++++GW  Fvk++ ++ gD++vF++dg+ +f  +vk+f++
  AHYPO_013063-RA 14 LPNLSSNRLKVPSKFVEHLGDRKSG--SLSLTGPSGNIWQVDL--FEYSGHLFFRDGWPTFVKDHSIQCGDTLVFRYDGNLRF--TVKIFDE 99
                     67899***********777877555..6***************..********************************997777..9***986 PP
2B351.12.4e-16253348198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                      f+ v++ s+   ++ l +p +f ++h  +  + +++tl++++g  W+v+ i   +++ ++++l +GW +F++ang+k  D+++F+l++  e +l
  AHYPO_013063-RA 253 FVRVMSYSNIKGNSTLKIPTQFSTSHLPN--SRIQVTLMNLNGDCWTVNSIPtiKRHTRMHTLCGGWIGFARANGVKIEDVCIFELVD--ELKL 342
                      677888888889999***********634..6678**************96566999999*************************976..7777 PP

                      EEEEE- CS
               B3  93 vvkvfr 98 
                      +v+++r
  AHYPO_013063-RA 343 RVRILR 348
                      898886 PP
3B362.75.8e-20467557197
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f kv ++s+v+ s+ l +p+kfa+++  +  +  +++l++++g sW+v+l   +++ +  + +GWk+F++ n++k+gD++vF+l +++ f   v
  AHYPO_013063-RA 467 FTKVIMSSNVSGSCALAVPRKFAADYLPS-SR-SEVVLRNLNGASWNVTL--VRYGLQPKFCSGWKSFAQMNNVKVGDMCVFELLEERVF--QV 554
                      89***********************9433.34.49***************..9999999999*********************9887777..77 PP

                      EEE CS
               B3  95 kvf 97 
                      +vf
  AHYPO_013063-RA 555 RVF 557
                      776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-253101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-243102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.6077100IPR003340B3 DNA binding domain
CDDcd100174.95E-20798No hitNo description
SMARTSM010191.1E-149100IPR003340B3 DNA binding domain
PfamPF023628.2E-171499IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.4E-21246348IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-22248351IPR015300DNA-binding pseudobarrel domain
CDDcd100172.41E-18251348No hitNo description
PfamPF023625.2E-14253348IPR003340B3 DNA binding domain
SMARTSM010199.8E-14253350IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887253350IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-25460558IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-25460558IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-24465557No hitNo description
PfamPF023625.2E-17467557IPR003340B3 DNA binding domain
SMARTSM010191.2E-19467560IPR003340B3 DNA binding domain
PROSITE profilePS5086315.326467560IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MMKGRKPHFI EVFLPNLSSN RLKVPSKFVE HLGDRKSGSL SLTGPSGNIW QVDLFEYSGH  60
LFFRDGWPTF VKDHSIQCGD TLVFRYDGNL RFTVKIFDET SCEKDEAFLA HCTQGASECD  120
DNLRKKRERD TEASLVKSDS EKKMRGSWVP VHEDSLAVSK KSKNKCLKSM DAVMNEHDTG  180
TENTITTCET TVVLAMAAPD GFDALQFHNK KITPNSEKSW KKKQMPEKQN TPSISKFIEE  240
RAAHYFSSTF PYFVRVMSYS NIKGNSTLKI PTQFSTSHLP NSRIQVTLMN LNGDCWTVNS  300
IPTIKRHTRM HTLCGGWIGF ARANGVKIED VCIFELVDEL KLRVRILRLG LEGLDYQIGS  360
SFVDTDGVRS GERCFETIED VTPDVGVNSA EDLVQINEGL DCSSPSSFGV HDDSTSELLL  420
CDAGNTMSYH TIGDNQVDLQ VRHTTEMQPT PEKSRDFLSF TSPYPSFTKV IMSSNVSGSC  480
ALAVPRKFAA DYLPSSRSEV VLRNLNGASW NVTLVRYGLQ PKFCSGWKSF AQMNNVKVGD  540
MCVFELLEER VFQVRVFEDY LTKPVCADDE NIADDSGSIE STQCGSLSER VLQMGVFERI  600
QKEPEYLNDE IIGDDSTDFI QSTQFGVESE T*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010683976.10.0PREDICTED: B3 domain-containing protein Os01g0723500 isoform X1
TrEMBLA0A0K9RPH00.0A0A0K9RPH0_SPIOL; Uncharacterized protein
STRINGXP_010683976.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-20B3 family protein