PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013017-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bHLH

Protein Properties

Length: 349aa MW: 38390.5 Da PI: 6.4436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013017-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.2e-05	73	106	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + f+ Lr+l+P+ ++K + a+ L +++eY++ Lq AHYPO_013017-RA 73 DLFQILRDLIPHG----DQKRDTASFLLEVIEYVQLLQ 106 679*******7....79**************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.09E-11	38	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-17	39	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.801	40	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.66E-11	42	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MKSGKGNNLD DDEDYEDDFT SKKESSSANK DSKNNDKASA MRSKHSVTEQ RRRSKINERQ 60 AKPAWDRKGF GDDLFQILRD LIPHGDQKRD TASFLLEVIE YVQLLQEKVQ KFEGSYQGWS 120 AEPTKLMPWF IRSVIWKQRH SHWRVQSFLG HPPAVKNGSN SGSTLKFDER NFSTNPGVAA 180 NVQTPVTNDS VHDAFRALDQ QSELVDKEAT LPTPFSLQMP TVVPTNGEDS RLSQRPASGS 240 PSAPCPISND DQQGEHTIEG GTISISSSYS HGLLMTLTQA LQSSGVDLSQ ASISIQIDLG 300 KRAKQGATPG LCGNKESENV VSHDLNMGHV GDGSGMEELE QPHKKLKS*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MKSGKGNNLD DDEDYEDDFT SKKESSSANK DSKNNDKASA MRSKHSVTEQ RRRSKINERQ  60
AKPAWDRKGF GDDLFQILRD LIPHGDQKRD TASFLLEVIE YVQLLQEKVQ KFEGSYQGWS  120
AEPTKLMPWF IRSVIWKQRH SHWRVQSFLG HPPAVKNGSN SGSTLKFDER NFSTNPGVAA  180
NVQTPVTNDS VHDAFRALDQ QSELVDKEAT LPTPFSLQMP TVVPTNGEDS RLSQRPASGS  240
PSAPCPISND DQQGEHTIEG GTISISSSYS HGLLMTLTQA LQSSGVDLSQ ASISIQIDLG  300
KRAKQGATPG LCGNKESENV VSHDLNMGHV GDGSGMEELE QPHKKLKS*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021756146.1	1e-173	transcription factor BIM2-like
Swissprot	Q9CAA4	1e-89	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0K9RDJ7	1e-159	A0A0K9RDJ7_SPIOL; Uncharacterized protein
STRING	XP_010681151.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	5e-71	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	AHYPO_013017-RA

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]