PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_012575-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 520aa MW: 56531.2 Da PI: 5.9565 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.9 | 8e-09 | 370 | 401 | 23 | 54 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 ryps +++ LA+++gL+ +qV++WF N R + AHYPO_012575-RA 370 RYPSDADKHLLARQTGLSRNQVSNWFINARVR 401 8*****************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.3E-12 | 248 | 365 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-17 | 253 | 338 | IPR006563 | POX domain |
SMART | SM00389 | 1.9E-4 | 326 | 409 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-12 | 369 | 412 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.16E-10 | 370 | 406 | No hit | No description |
PROSITE profile | PS50071 | 11.013 | 370 | 405 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 371 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-12 | 371 | 401 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
MSQEYHHQNH QQTEDNSGIF NFPNEFDRSA AALKPQQTHQ NERVLHPVYE TSGMLSEMFS 60 FSHGHQPGPN PDILDYRRVV GSMGPDPDPD LGSRDYDQIG GINTAAMQLF LTNQHPRSPS 120 SQPLEVFPHI WNTTHVDNNQ AAESSGQGLS LSLSSSLKHL ELSKVEEFRN IDGSNSETNH 180 TMFFNKHQQG NVTGIGPSSS GHFFKNLAPG LGSDPDPDPD PIQIISGFGD PSSVQIHLGY 240 GSASTSSLGV VNVLRNSKYA KPAQELLQEF CSVGRGQIKK PNLVRQDLSN QNPTSSGGGG 300 GGESGGSTSS TKDPPQLTPA DRIEHQRRKV KLLAMLDEEA IQVQLKHSCE MLGEKDPTTN 360 SGITKGETPR YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMIEEM YQKESKDIEE 420 ETEKETTQNP LSSSSSEPKI SSTECNTMLA PQSQLPSGSQ DLGDTCHHFG GAQNMGPATI 480 ISFGNPSGDV SLTLGLRHAG NVPQKVTGFS VKESTQSKD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021758084.1 | 1e-137 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_021758092.1 | 1e-137 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q94KL5 | 8e-59 | BLH4_ARATH; BEL1-like homeodomain protein 4 | ||||
TrEMBL | A0A0K9RS33 | 7e-83 | A0A0K9RS33_SPIOL; Uncharacterized protein | ||||
STRING | XP_010680937.1 | 1e-101 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23760.3 | 1e-51 | BEL1-like homeodomain 4 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_012575-RA |
Publications ? help Back to Top | |||
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