PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012575-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 520aa    MW: 56531.2 Da    PI: 5.9565
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012575-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98e-093704012354
                      SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      ryps +++  LA+++gL+ +qV++WF N R +
  AHYPO_012575-RA 370 RYPSDADKHLLARQTGLSRNQVSNWFINARVR 401
                      8*****************************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-12248365IPR006563POX domain
PfamPF075262.2E-17253338IPR006563POX domain
SMARTSM003891.9E-4326409IPR001356Homeobox domain
SuperFamilySSF466893.72E-12369412IPR009057Homeodomain-like
CDDcd000867.16E-10370406No hitNo description
PROSITE profilePS5007111.013370405IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-17371411IPR009057Homeodomain-like
PfamPF059201.0E-12371401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MSQEYHHQNH QQTEDNSGIF NFPNEFDRSA AALKPQQTHQ NERVLHPVYE TSGMLSEMFS  60
FSHGHQPGPN PDILDYRRVV GSMGPDPDPD LGSRDYDQIG GINTAAMQLF LTNQHPRSPS  120
SQPLEVFPHI WNTTHVDNNQ AAESSGQGLS LSLSSSLKHL ELSKVEEFRN IDGSNSETNH  180
TMFFNKHQQG NVTGIGPSSS GHFFKNLAPG LGSDPDPDPD PIQIISGFGD PSSVQIHLGY  240
GSASTSSLGV VNVLRNSKYA KPAQELLQEF CSVGRGQIKK PNLVRQDLSN QNPTSSGGGG  300
GGESGGSTSS TKDPPQLTPA DRIEHQRRKV KLLAMLDEEA IQVQLKHSCE MLGEKDPTTN  360
SGITKGETPR YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMIEEM YQKESKDIEE  420
ETEKETTQNP LSSSSSEPKI SSTECNTMLA PQSQLPSGSQ DLGDTCHHFG GAQNMGPATI  480
ISFGNPSGDV SLTLGLRHAG NVPQKVTGFS VKESTQSKD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. {ECO:0000269|PubMed:17873098}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021758084.11e-137BEL1-like homeodomain protein 4
RefseqXP_021758092.11e-137BEL1-like homeodomain protein 4
SwissprotQ94KL58e-59BLH4_ARATH; BEL1-like homeodomain protein 4
TrEMBLA0A0K9RS337e-83A0A0K9RS33_SPIOL; Uncharacterized protein
STRINGXP_010680937.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-51BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]