PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_012550-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14262.2 Da PI: 4.8142 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.8e-16 | 14 | 105 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk + l +++l lpk f++++g++ s t++l + +++W++ l ++ ++ +l++ W +Fv+ L g f+vFk++g+s+f +v AHYPO_012550-RA 14 FFKFILDQPRLDLQQLELPKLFMNTYGND--LSDTISLILPPNKVWKFDL--VRQNNKAYLQNDWPKFVEFYSLSHGHFLVFKYQGNSCF--NV 101 8888999999999*************988..888****************..88888899******************************..77 PP EEE- CS B3 95 kvfr 98 +f+ AHYPO_012550-RA 102 VIFD 105 7775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.12E-18 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.80E-12 | 13 | 105 | No hit | No description |
Pfam | PF02362 | 9.5E-13 | 14 | 104 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-10 | 14 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.0E-19 | 14 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.548 | 14 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEGDDNDKWP IASFFKFILD QPRLDLQQLE LPKLFMNTYG NDLSDTISLI LPPNKVWKFD 60 LVRQNNKAYL QNDWPKFVEF YSLSHGHFLV FKYQGNSCFN VVIFDLGASE IDYPCHYETG 120 R* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021731118.1 | 6e-46 | B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | A0A1Q3DFU3 | 6e-28 | A0A1Q3DFU3_CEPFO; B3 domain-containing protein | ||||
STRING | XP_010681213.1 | 1e-43 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-20 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_012550-RA |