PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012333-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 212aa    MW: 23001 Da    PI: 4.6287
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012333-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1558106255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+G+  +++ g+Wv+eIr+p++   ++r++lg++  ae+Aa+a++ a+++l+g
  AHYPO_012333-RA  58 LYRGI--RPRGGKWVSEIREPRK---TTRIWLGTYPKAEMAAAAYDVAALALKG 106
                      69***..699**********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.16E-1657116No hitNo description
SMARTSM003803.6E-2858120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-2658115IPR001471AP2/ERF domain
PROSITE profilePS5103219.57258114IPR001471AP2/ERF domain
PfamPF008478.4E-958106IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-1758115IPR016177DNA-binding domain
PRINTSPR003671.5E-65970IPR001471AP2/ERF domain
PRINTSPR003671.5E-696116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MADQTQSSNV KNQLNQPPLS VSIPPDVSNP PPPPIAGPSV TTMSPSSLAG SPIGKHPLYR  60
GIRPRGGKWV SEIREPRKTT RIWLGTYPKA EMAAAAYDVA ALALKGNEAI LNFPEDVLRY  120
PVPGSASPAD IRKAASTAAA MKQDKKEENK MEVDKVEKEG CEEEEFIDIE ALFDMPNLLV  180
DMAGGMMVSP PRMSNSDDRE YNETGSLWNY D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1449116474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021735917.18e-78ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ903e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0K9R4J62e-70A0A0K9R4J6_SPIOL; Uncharacterized protein
STRINGXP_010669007.18e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-38ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]