PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012243-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 277aa    MW: 30950.9 Da    PI: 5.0764
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012243-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.13.9e-28118171155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      kprl+W++eLHe+Fv+++e L G++kA+Pkti+e m+vkg+t+e+v+SHLQkYRl
  AHYPO_012243-RA 118 KPRLVWSTELHEKFVDVIEVL-GIDKAVPKTIMESMDVKGITRENVASHLQKYRL 171
                      79*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.47E-18116175IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27117175IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23118172IPR006447Myb domain, plants
PfamPF002491.7E-5121170IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEDRSELKWQ GWEMALPSPE DLIPSSQSLI SPELALAFDI SQEQIFHSGI DLNYVMYDDC  60
STIFPTEETF DSLNLRLFPG RSDSSKLRKG GFCSSDDTNS SSKDENGDDN GVNRAVKKPR  120
LVWSTELHEK FVDVIEVLGI DKAVPKTIME SMDVKGITRE NVASHLQKYR LNLKRNGVSN  180
EGHTMSKRDS KLLECDGSRA MEKQHQMPHK EQSEQQQSLE CNALPLMPMS KPMPMVPVLY  240
GYGYGQLGLP GSSSAAHEYC ALESGAYSIR RYSLIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A7e-23118174157Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019107252.12e-92PREDICTED: transcription factor PCL1
TrEMBLA0A0K9QM925e-78A0A0K9QM92_SPIOL; Uncharacterized protein
STRINGXP_010690987.16e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.16e-35G2-like family protein