PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012165-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HD-ZIP
Protein Properties Length: 768aa    MW: 84553.9 Da    PI: 7.0117
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012165-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox597.9e-192987357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                     k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  AHYPO_012165-RA 29 KYVRYTPEQVEALERVYHECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87
                     5678*****************************************************97 PP
2START168.93.3e-531743822205
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  W +++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v s+g  g+++l
  AHYPO_012165-RA 174 IAEETLTEFLSKATGTAIEWIQMPGMKPGPDSIGIIAISHGCTGVAARACGLVSLEPT-RVAEILKDRLSWYRDCRAVDVMNVMSTGngGTIEL 266
                      789*******************************************************.9999999999************************* PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       + +l+al++l+p Rdf+  Ry+  l++g+ vi+++S++++q+ p+     ++vRae lpSg+li+p+++g+s +++v+h+dl+ + ++++lr+
  AHYPO_012165-RA 267 LYLQLYALTTLAPaRDFWLMRYTSLLEDGSVVICERSLNNTQNGPSmpsVEHFVRAEILPSGYLIRPCEGGGSIIHIVDHMDLEPWRVPEVLRP 360
                      *********************************************9887889****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXXX CS
            START 184 lvksglaegaktwvatlqrqce 205
                      l++s++  +++t++a+l+++++
  AHYPO_012165-RA 361 LYESSTLLAQRTTMAALRQLRQ 382
                      ******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.712488IPR001356Homeobox domain
SMARTSM003892.8E-162692IPR001356Homeobox domain
SuperFamilySSF466893.81E-172790IPR009057Homeodomain-like
CDDcd000861.20E-162989No hitNo description
PfamPF000462.1E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-193187IPR009057Homeodomain-like
CDDcd146865.69E-681119No hitNo description
PROSITE profilePS5084825.045164379IPR002913START domain
CDDcd088751.49E-75168383No hitNo description
Gene3DG3DSA:3.30.530.202.6E-21171379IPR023393START-like domain
SMARTSM002348.5E-37173383IPR002913START domain
SuperFamilySSF559611.33E-33173383No hitNo description
PfamPF018521.5E-50174382IPR002913START domain
PfamPF086704.7E-45637766IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MFKALKSFEM MAVSSACRDA NKMAADSGKY VRYTPEQVEA LERVYHECPK PSSLRRQQLI  60
RECPILSNIE PKQIKVWFQN RRCREKQRKE SSRLQAVNRK LTAMNKLLME ENDRLQKQVG  120
QLVYENSYFR QQTQNAATLA TTDTSCDSVV TSGQQQITSE RPPKDASPAG LMSIAEETLT  180
EFLSKATGTA IEWIQMPGMK PGPDSIGIIA ISHGCTGVAA RACGLVSLEP TRVAEILKDR  240
LSWYRDCRAV DVMNVMSTGN GGTIELLYLQ LYALTTLAPA RDFWLMRYTS LLEDGSVVIC  300
ERSLNNTQNG PSMPSVEHFV RAEILPSGYL IRPCEGGGSI IHIVDHMDLE PWRVPEVLRP  360
LYESSTLLAQ RTTMAALRQL RQISQEISQP NITGFGRRPA ALRAFSQRLS KGFNEAVNGF  420
MDEGWSMIES DGVDDVTILV NSSPNKMMGA NQFYSNGFPS VGTSVLCARA SMLLQNVPPA  480
VLLRFLREHR SEWADNGIDA YAAAAVKAAP CTIPVARTGC VGGQVILPLA HTIENEEDVS  540
SPKCTLDLTS ALEIGSAGNK ALGDKNRSGS GKSVMTIAFQ FAFEMHLQAS VASMARQYVR  600
SIISSVQRVA SALSPSRFGS LNDSPLSPGT PEAQTLARAE LLKPSHDGGE SVLKTLWHHS  660
DAILCCSLKA LPVFTFANQA GLDMLETTLV ALQDITLEKI FDEQGRKNLF TELPQIMQQG  720
FICLQGGICM SSMGRPISYE RAVAWKVFND SEDAQCMCFM FINWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012856468.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15-like
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A2H5P8B60.0A0A2H5P8B6_CITUN; Uncharacterized protein
STRINGLus100114260.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]