PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012079-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family DBB
Protein Properties Length: 206aa    MW: 22563.6 Da    PI: 6.687
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012079-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box16.71.5e-05433534
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                      C+ +e   ++ fC  ++  lC+ C ++ H
  AHYPO_012079-RA  4 LCDVCEGAAAICFCAADEAALCRACDEKVH 33
                     7******99******************998 PP
2zf-B_box28.33.7e-095392338
         zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                      +kC+ +e+ ++ ++Ce +++ lC +C ++ H g    H+
  AHYPO_012079-RA 53 VPKCDICENAPAFFYCEIDGSSLCLQCDMAVHVGgkrtHR 92
                     689*****************************66666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.456147IPR000315B-box-type zinc finger
SMARTSM003361.2E-5147IPR000315B-box-type zinc finger
CDDcd000211.88E-4333No hitNo description
SMARTSM003366.8E-145196IPR000315B-box-type zinc finger
PROSITE profilePS501199.35196IPR000315B-box-type zinc finger
PfamPF006436.3E-75392IPR000315B-box-type zinc finger
CDDcd000217.73E-85493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MRTLCDVCEG AAAICFCAAD EAALCRACDE KVHMCNKLAS RHIRVGLAAP NAVPKCDICE  60
NAPAFFYCEI DGSSLCLQCD MAVHVGGKRT HRRYLLLRQR AEFPGDNGHV EGTGLQQADR  120
MEVRAALNQS PNTIAREKEH NHVVFVDGND VPEARMDNKM IDLNARPQRS ILKSSNHQGI  180
DDAPWSNGDS ACIVPVRSFK SEPEK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021753490.11e-115B-box zinc finger protein 19-like isoform X2
SwissprotC0SVM56e-77BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9QJY41e-104A0A0K9QJY4_SPIOL; Uncharacterized protein
STRINGXP_010690759.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.17e-67DBB family protein