PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011957-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

GRAS

Protein Properties

Length: 701aa MW: 79664.5 Da PI: 7.3141

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011957-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.2	4.2e-115	321	692	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL cA+av s+d++ a+ lL+++++++sp+gd +qR+a+yf+ +L+arla+ ++ +yk l + ++ ++ l a+++f v+P+ k++ AHYPO_011957-RA 321 LRSLLSLCAQAVGSNDQRSANDLLQQIRQHSSPTGDGNQRMAHYFADGLEARLAGVGTPIYKCLLTGPAC---AVDILRAYHMFLAVCPFKKIG 411 578999*****************************************************999888887...9**************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++ N++I e +e+++r+HiiD+++ +G+QWp+L+q L+sRp+gpp++RiTgv+ p++g +++leetg+rL+++Ae++++pfefn+ vak++ AHYPO_011957-RA 412 NFFSNRTITEVAEKATRLHIIDIGMVYGFQWPCLFQRLSSRPGGPPNIRITGVDLPQPGfrPSKRLEETGRRLKNYAESFNIPFEFNA-VAKKW 504 ******************************************************9*************************.7 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 e++++e+L+++++E l+Vn+ ++ +++++e++ ++ +rd +L+lv++++P +++ + ns+ F +rf eal ++s+lfd+++++lpr+ AHYPO_011957-RA 505 ETVNVEDLKLDTDELLVVNCLFRFKYIPEETAMVDCPRDMLLNLVRQIKPAIFIQGAVNGAFNSPFFITRFREALFHFSTLFDMIDTNLPRDIP 598 ************************99999999****************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 eri +Ere++gr+++nv+aceg er+er et+++W+ r e++GF+++pl+ ++++ ak ++ v+ + ++++e+ ++l+lgWk+r +++++ W+ AHYPO_011957-RA 599 ERILIEREIFGRQAMNVIACEGLERIERPETYKQWQVRNERVGFNQLPLKPEIVAMAKKRVKSVYHKDFSIDEDGHWLLLGWKGRIVYALTNWK 692 *************************************************************888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.335	295	672	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-112	321	692	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MDPQLEELYG TLHRFKFNDQ KVPFYPNTLQ DPNLHPNFVN TVKLQESNPI NSQNPNFNLV 60 VPSVGQEFDT SLHEDYDFSD VVLKYINQVL MEEDEEEKAR VNHEPSALAA AERTLYESYI 120 SPSNSRRQYG VLEFNFEKSM SSGSSVGGYV DTSVESPVSA LNVSKIFNEG QSILQFQKGV 180 EEARKFLPKD PLYTGLIIDG SFPNLDNVVS KESGVDLENR GENEGLARVF GGKKNRNRDE 240 VVSEEKRDSK QSANSFIPDE AVKRSEMWDR VLLCSGGKHD AVLREALQSE LNKNAQINQA 300 KGSNSGKGRG RRKGKREVID LRSLLSLCAQ AVGSNDQRSA NDLLQQIRQH SSPTGDGNQR 360 MAHYFADGLE ARLAGVGTPI YKCLLTGPAC AVDILRAYHM FLAVCPFKKI GNFFSNRTIT 420 EVAEKATRLH IIDIGMVYGF QWPCLFQRLS SRPGGPPNIR ITGVDLPQPG FRPSKRLEET 480 GRRLKNYAES FNIPFEFNAV AKKWETVNVE DLKLDTDELL VVNCLFRFKY IPEETAMVDC 540 PRDMLLNLVR QIKPAIFIQG AVNGAFNSPF FITRFREALF HFSTLFDMID TNLPRDIPER 600 ILIEREIFGR QAMNVIACEG LERIERPETY KQWQVRNERV GFNQLPLKPE IVAMAKKRVK 660 SVYHKDFSID EDGHWLLLGW KGRIVYALTN WKPGFPNFLR Q

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MDPQLEELYG TLHRFKFNDQ KVPFYPNTLQ DPNLHPNFVN TVKLQESNPI NSQNPNFNLV  60
VPSVGQEFDT SLHEDYDFSD VVLKYINQVL MEEDEEEKAR VNHEPSALAA AERTLYESYI  120
SPSNSRRQYG VLEFNFEKSM SSGSSVGGYV DTSVESPVSA LNVSKIFNEG QSILQFQKGV  180
EEARKFLPKD PLYTGLIIDG SFPNLDNVVS KESGVDLENR GENEGLARVF GGKKNRNRDE  240
VVSEEKRDSK QSANSFIPDE AVKRSEMWDR VLLCSGGKHD AVLREALQSE LNKNAQINQA  300
KGSNSGKGRG RRKGKREVID LRSLLSLCAQ AVGSNDQRSA NDLLQQIRQH SSPTGDGNQR  360
MAHYFADGLE ARLAGVGTPI YKCLLTGPAC AVDILRAYHM FLAVCPFKKI GNFFSNRTIT  420
EVAEKATRLH IIDIGMVYGF QWPCLFQRLS SRPGGPPNIR ITGVDLPQPG FRPSKRLEET  480
GRRLKNYAES FNIPFEFNAV AKKWETVNVE DLKLDTDELL VVNCLFRFKY IPEETAMVDC  540
PRDMLLNLVR QIKPAIFIQG AVNGAFNSPF FITRFREALF HFSTLFDMID TNLPRDIPER  600
ILIEREIFGR QAMNVIACEG LERIERPETY KQWQVRNERV GFNQLPLKPE IVAMAKKRVK  660
SVYHKDFSID EDGHWLLLGW KGRIVYALTN WKPGFPNFLR Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-51	321	692	5	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019107225.1	0.0	PREDICTED: scarecrow-like protein 33
Refseq	XP_019107229.1	0.0	PREDICTED: scarecrow-like protein 33
TrEMBL	A0A0K9RZZ5	0.0	A0A0K9RZZ5_SPIOL; Uncharacterized protein
STRING	XP_010690788.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-177	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	AHYPO_011957-RA