PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_011912-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 81aa MW: 9375.08 Da PI: 11.7543 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.9 | 2.2e-28 | 19 | 69 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt +LH++Fv+ave+LGG AtPk il++m+vkg+tl+hvkSHLQ++R+ AHYPO_011912-RA 19 PRLRWTDDLHRCFVRAVERLGG---ATPKMILQIMGVKGITLSHVKSHLQMFRS 69 8*******************99...89**************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-28 | 15 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.114 | 15 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.97E-15 | 17 | 72 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.0E-24 | 19 | 70 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.6E-8 | 20 | 67 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 81 aa Download sequence Send to blast |
MEMTKERSGI RPYVRSNSPR LRWTDDLHRC FVRAVERLGG ATPKMILQIM GVKGITLSHV 60 KSHLQMFRSM KQEQMIRGNF * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 8e-16 | 20 | 71 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 8e-16 | 20 | 71 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 8e-16 | 20 | 71 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 8e-16 | 20 | 71 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019106903.1 | 1e-38 | PREDICTED: uncharacterized protein LOC104901034 | ||||
Swissprot | Q700D9 | 2e-24 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A1R3H3F7 | 6e-35 | A0A1R3H3F7_9ROSI; Uncharacterized protein | ||||
STRING | XP_010686880.1 | 4e-38 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 1e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_011912-RA |