PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011911-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 262aa MW: 29629.8 Da PI: 10.5722

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011911-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.3	2.3e-30	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt++LH+rF++av++LGG+++AtPk il++m+v+g+t++hvkSHLQ+YR+ AHYPO_011911-RA 48 KPRLRWTENLHHRFLRAVARLGGEDRATPKMILHAMGVDGITVSHVKSHLQMYRS 102 79****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.0E-29	45	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.019	45	105	IPR017930	Myb domain
SuperFamily	SSF46689	9.85E-16	46	105	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-25	48	102	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	50	101	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MEISKENNNS NNNNNFRAKI PFVRNISAKE FIEENQNPNI RPYARSKKPR LRWTENLHHR 60 FLRAVARLGG EDRATPKMIL HAMGVDGITV SHVKSHLQMY RSLRQEMLIQ EALKAAKENG 120 KDKEFIAKLP ELLNASACRS VSRRQTRIQR LKSLLIKNAL DKHFSIDEPT PPSLITTGQN 180 SHGFMIFDDL VQTRTFISSS SKIKEKVSSK GKEKTNYDDH PIDKNRMICE STAILNPTMK 240 ASTSGSSRSS ANEEVSLELS L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-15	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	48	104	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-15	48	104	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853048.1	2e-55	myb family transcription factor PHL13-like
STRING	XP_010686814.1	3e-48	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_011911-RA