PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011800-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 227aa    MW: 25553.3 Da    PI: 4.7172
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011800-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-10555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     ++rWT+eE++ l ++v+++G g W  I +  +       R+  ++k++w +
  AHYPO_011800-RA  5 KLRWTPEEEKALREGVAKHGVGKWIIILKDPQfshilRCRSNVNLKHKWKN 55
                     78****************************99999999999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.092161IPR017930Myb domain
SuperFamilySSF466891.38E-13259IPR009057Homeodomain-like
SMARTSM007175.8E-4459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-12564IPR009057Homeodomain-like
PfamPF002491.3E-7655IPR001005SANT/Myb domain
CDDcd116601.35E-16758No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGNPKLRWTP EEEKALREGV AKHGVGKWII ILKDPQFSHI LRCRSNVNLK HKWKNINRAT  60
EKQKESLSTK EETALGALGE VKYGIGDSKS IQEDPEFNKC SDSCSDVELQ EKWQNMKVEA  120
SMPQPAIQDQ LNFEFEHTAA RKRKMSEMQS ELDANAQAET DAEEESEAKA ETETQAEAKT  180
EAGPSQSLLQ KMPEAESDKE AEINAESETE NKEQKTKQYL NASNIQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49850.15e-22telomere repeat binding factor 3