PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_011729-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | Dof | ||||||||
Protein Properties | Length: 254aa MW: 26231.2 Da PI: 7.7707 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.5 | 2.5e-37 | 26 | 86 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ l+cprC s ntkfCyynny+ sqPr+fCkaCrryWt+GG+lr++P+Ggg+rk k+s AHYPO_011729-RA 26 QQDPLPCPRCSSLNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDIPIGGGSRKTAKRS 86 567899**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-25 | 2 | 77 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.1E-32 | 29 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.621 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0042545 | Biological Process | cell wall modification | ||||
GO:0045787 | Biological Process | positive regulation of cell cycle | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MPTEPAERRT VVRAQQMGAP LPPVEQQDPL PCPRCSSLNT KFCYYNNYNF SQPRHFCKAC 60 RRYWTHGGTL RDIPIGGGSR KTAKRSRTSS ASSSAIVASS ATSTSSIGSI LEPIPLSTQA 120 QAQAQTQSQS QLFVSLPSIG GNGGFTSLLS GGGGPTSGFL ALGGFGLGLG LDDVGFGLGR 180 GVWAFPHHDI GPYENCGSVS GDVEGGHGGG IQTGGNRSDT WQMESGEVVG FVGADCFTAL 240 PELAISTTGN GLK* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00402 | DAP | Transfer from AT3G50410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021714218.1 | 6e-95 | dof zinc finger protein DOF3.4-like | ||||
TrEMBL | A0A0K9S2U7 | 3e-72 | A0A0K9S2U7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010680466.1 | 4e-83 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66940.1 | 7e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_011729-RA |