PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011599-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Dof
Protein Properties Length: 368aa    MW: 40576 Da    PI: 8.1807
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011599-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-3967128263
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                      k+++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  AHYPO_011599-RA  67 KDQNLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTQGGSLRNVPVGGGSRKNKRSSS 128
                      7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2660119IPR003851Zinc finger, Dof-type
PfamPF027012.1E-3368125IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.23671125IPR003851Zinc finger, Dof-type
PROSITE patternPS01361073109IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDAAQWPHPQ QVGGFSRPME ELAIPQIPNN NNNDMNNNNN TNNPPNNSRA SSTSQVVGDQ  60
RRARPQKDQN LNCPRCNSTN TKFCYYNNYS LTQPRYFCKT CRRYWTQGGS LRNVPVGGGS  120
RKNKRSSSSS SSSNPSSTSN PSSIPTKIIP DLNPPSSLSH LITPSQNPKF LEGQDLNLAF  180
PIQGIFHNND QNHDQPINIM NITNNSNNNN NNNNNNNNDN NNNSNNSCST TTTSSTPISA  240
LDLLRSGIAT RGSLNPFVPM PMPDSNTLYP SGFPNLQDFK PNLNVFSPQN DHNSMVGSGD  300
NNAARLLFPF ADMNKLASST PTTTPPPHHH HHHHEIDHQT NKSENDHHHN QGPTTEYWSG  360
MLGGGTW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694741.11e-127PREDICTED: dof zinc finger protein DOF3.7
TrEMBLA0A0K9QVQ91e-111A0A0K9QVQ9_SPIOL; Uncharacterized protein
STRINGXP_010694741.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-46Dof family protein