PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011492-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRF
Protein Properties Length: 498aa    MW: 54449.2 Da    PI: 6.9103
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011492-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.51.3e-24201244144
              WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                      daepgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e
  AHYPO_011492-RA 201 DAEPGRCRRTDGKKWRCSRDVAPNQKYCERHMHRGRPRSRKHVE 244
                      79****************************************97 PP
2QLQ55.12.3e-19135165232
              QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 
                      +FTaaQ+ +L++Q+++yKy++a++PvPp+Ll
  AHYPO_011492-RA 135 PFTAAQWKELERQAMIYKYMMASLPVPPDLL 165
                      8****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.3E-12134170IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.277135170IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-14135165IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.734201245IPR014977WRC domain
PfamPF088794.3E-20202244IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MTKCTASTYS NEIGVSNKKF QEGQVVVVEL GLKLQQDQDR SFLSKRSDLD HDHHDDDHDG  60
DGNSGPTSNG YNNMMSSISP SSVHCSTTNT TTSSAVSSAG FVRGLQPFDV SSSYYSPANP  120
FFKSSVGMAT TMGFPFTAAQ WKELERQAMI YKYMMASLPV PPDLLYSSFP TNFAPTFAPA  180
SYFLGKYGSG ISMRWSGNSK DAEPGRCRRT DGKKWRCSRD VAPNQKYCER HMHRGRPRSR  240
KHVELQQQQQ QQQHSISNLS LNNTIIDKDN IAPPKKTRLS DSSSSNPQCV ASNLQSSTKA  300
SMFDNHLVSP TNPFEDSRNL GWTDEQQWNH LVHQANMGSS VFHNQFDGET LNLNSNSGFN  360
TKSDELGLLE RPLIDAWSMG MAGNKNIGGN CNKLSSNGNT IDEEMCQIHM GLGLIDSWVS  420
STTTPGGPLA EVLRPGNLAI SDAGETKFVT PPATTVSSPS GVLQKTLATF SDSSESNSPI  480
TCNNSKASSD MPFHWLN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0944810.0EU094481.1 Amaranthus hypochondriacus clone AHAAC006 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666149.10.0PREDICTED: growth-regulating factor 7
TrEMBLA0A0J8B8Z50.0A0A0J8B8Z5_BETVU; Uncharacterized protein
STRINGXP_010666149.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.18e-37growth-regulating factor 7