PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_011454-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 485aa MW: 53196.1 Da PI: 6.2946 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 74.9 | 1.1e-23 | 260 | 304 | 1 | 45 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 k r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++h AHYPO_011454-RA 260 KSRMRWTPELHEAFVEAVHKLGGSERATPKGVLKLMKVEGLTIYH 304 68******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.53E-10 | 258 | 304 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 259 | 304 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-15 | 260 | 303 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.2E-6 | 262 | 302 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.0E-22 | 340 | 386 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 485 aa Download sequence Send to blast |
MERNHALSIQ CSGPRQLGAS GALSSSLPVL PSTLEEKYPK LPDSQQVTME RELVNDPLLF 60 HSHPLPSSSK IVGHMLSSSG SSNNVHFSLP THEKHSNSYM TPSASNGSSL PLLQSTHTAL 120 IHSSASDNYT KGNNNFSWCS DLGPGFPDFP SHTTLQNGHI QFNTDGGSNI VTHEEFVKRN 180 DWQEWADQLI ADDEPLSSNW SELLVDTNVV NHETKMSNKL VDSTSNLSLH PMQSQQELSV 240 SSAEVAAVAG SAPGASAPAK SRMRWTPELH EAFVEAVHKL GGSERATPKG VLKLMKVEGL 300 TIYHKYRTAR YRPEPSEGSS SEKSSTPLAD FSSLDLKAGM DLTEALRMQM EVQKRLHAQL 360 EIQRNLQLRI EEQGRCLQKM LEQQAKAGGA PKLKIDSLTS DDPPSEKPQT TGQEKRSECA 420 PSQDQNNGKL TDAPLTPRET TERIGREGKI PNPCDQDLSD QHPTKRSKRS ETKTNLFPET 480 PEDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-25 | 259 | 312 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021848603.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like | ||||
TrEMBL | A0A0K9QTI8 | 0.0 | A0A0K9QTI8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010696485.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 6e-71 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_011454-RA |