PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011200-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 1144aa    MW: 129163 Da    PI: 8.0034
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011200-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.001610511074223
                       EET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                       +C+   Cgk F+++ + + H+r+H
  AHYPO_011200-RA 1051 RCHhkECGKAFRSHKYVVLHQRVH 1074
                       69999*****************99 PP
2zf-C2H211.20.001211101136123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+   Cg +F+  s++ rH r+  H
  AHYPO_011200-RA 1110 YQCKikGCGLTFRFVSDFSRHRRKtgH 1136
                       99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.3E-141555IPR003349JmjN domain
PROSITE profilePS5118313.6611657IPR003349JmjN domain
PfamPF023753.8E-141750IPR003349JmjN domain
SMARTSM005581.4E-44285454IPR003347JmjC domain
PROSITE profilePS5118433.474285454IPR003347JmjC domain
SuperFamilySSF511977.96E-27286465No hitNo description
PfamPF023732.3E-36318437IPR003347JmjC domain
SMARTSM003551210271049IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028010291053IPR007087Zinc finger, C2H2
PROSITE profilePS5015713.54710501079IPR007087Zinc finger, C2H2
SMARTSM003554.510501074IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.13E-610511087No hitNo description
PROSITE patternPS00028010521074IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.6E-610551080IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.86310801109IPR007087Zinc finger, C2H2
SMARTSM003550.005210801104IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-910811104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028010821104IPR007087Zinc finger, C2H2
SuperFamilySSF576671.98E-1010901132No hitNo description
Gene3DG3DSA:3.30.160.602.1E-1011051133IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.32511101141IPR007087Zinc finger, C2H2
SMARTSM003550.1711101136IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011121136IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1144 aa     Download sequence    Send to blast
MGDIEIPQWL KDLPLAPEFR PTDTEFADPI AYISKIEKEA SVFGICKVIP PLPKPSKRFV  60
FNNLNKSLLR TRELGLDLNL TQPTDSSKRG SINRAVFTTR QQELGQDSKR IRVSVDSSQP  120
GSQKQVWQSG EFYTLEQFES KSKAFSRSVL GSIKDVSPLV IETLFWKAVL EKPIYVEYAN  180
DVPGSGFGEP EGMLGFSSTR KKRRKLCSQT QGGKSYSYWA QSSVNDARNL PVEVEIEPLI  240
SDSRPFSESG KESIDQSNSS FDDSSHSKKR GLCANAELEG TAGWKLSNCP WNLQVIAQSA  300
GSLTRFMLDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSL NFLHTGSPKT WYAVPGEYAF  360
AFEDVIRKQA YGGDLDHLAA LKLLGEKTTL LSPELVVASG IPCCRLVQNP GEYVVTFPRA  420
YHIGFSHGFN CGEAANFGTP QWLTIAKEAA VRRAVMDQLP MLSHQQLLYL LTMSFIYSVP  480
RTLLPGSRSS RLKNRLREER EQLVKKAFIE DVLKENYLLN TLIENNSATR AVLWHPDSLP  540
SFTELSSVGT VLDTELSVPS QKPVTQDIHP LITDGKPSND LYLDSNDLSC DFQIDSGTLV  600
CVACGILGYP IMSVVQPSKQ ILMEKFSSEA VLDIPLLPDS CIKNVFPETY NEETWDNSGF  660
LRPRIFCLEH AVQVEKLLQS KGGSKMLVIC HSDYQKIKAN ARAIAEELKT SYNYKEVQLD  720
TASQEDLKII DIAIDSEQPT DFQEDWTSKL GINLRFSVKT RKSCLPMKIE HALNIDYLLS  780
IMSPVTRISK IKWCSRKSRT IREPNHKRLD GNLSKKDTIE VSDSKEIRGR ILLRYYRKKY  840
RVKMQLVAEE SLAPICSLAC SRGETEANCR KINDIDEQGG SKTPRYNKAE SDSDTYPEKC  900
SVVNQETEEA DANIYPTRNE TSDMLLTCTE STATVEVDMP VLLVDCLNDS SQMGLRASSS  960
MSNAWEEKGK RKGKRTIELQ NDAEDNFIRS PCEGLRPRKN KGGAVHTEQE NSRTKKKKKA  1020
SDNEITYPCD HEGCQMRFTT KGDLLLHNRN RCHHKECGKA FRSHKYVVLH QRVHDDERPL  1080
KCTWGGCAMT FKWAWARTEH MRLHTGERPY QCKIKGCGLT FRFVSDFSRH RRKTGHLMTP  1140
PPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A7e-52283468157346Transcription factor jumonji (Jmj) family protein
6ip4_A7e-52283468157346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200204KKRRK
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865914.10.0probable lysine-specific demethylase ELF6
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0K9RQW90.0A0A0K9RQW9_SPIOL; Uncharacterized protein
STRINGXP_010695898.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]