PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011178-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 267aa    MW: 30081.8 Da    PI: 8.9622
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011178-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like826.6e-2691145156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k rl Wt +LH+rFv+ +e+L Gs k +Pktil+ m+v+g+t+e+v+SHLQkYR++
  AHYPO_011178-RA  91 KRRLSWTIQLHKRFVQSIEHL-GSSKVVPKTILHNMNVEGITRENVASHLQKYRSH 145
                      68*******************.999*****************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2489148IPR009057Homeodomain-like
SuperFamilySSF466895.38E-1689148IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-2491145IPR006447Myb domain, plants
PfamPF002491.7E-593143IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEDQSQMGLM SPDNLTPSSQ SLISPELASA FGITQEAFLP VFDPNYEMRA SCSTICPNEQ  60
LYYPYDFRVG SVDLSSDKDM DNKEKKRATK KRRLSWTIQL HKRFVQSIEH LGSSKVVPKT  120
ILHNMNVEGI TRENVASHLQ KYRSHLKNKK KEKKSNEGCS KDPSEIKSMG MEQLNVHLCP  180
SHEHGPSQQR LVQNGSVPLM VPPLGPYGYE HMGMPMSMSM PISIPMSMSM PMPMPMLRPM  240
ALPPTPTGYY GFELRACSML RNQPRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-1993147357Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021757282.11e-41transcription factor PCL1-like
SwissprotQ9SNB42e-22PCL1_ARATH; Transcription factor LUX
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-24G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]