PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_011013-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25328.1 Da PI: 9.7265 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.1 | 4.1e-22 | 25 | 66 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 r e +snrqvtfskRr g++KKA+EL++LC+ae+a+i+fs+ AHYPO_011013-RA 25 RMEKDSNRQVTFSKRRCGLFKKASELCTLCGAEAAIIVFSPG 66 7899************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 24.067 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-31 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.57E-32 | 17 | 85 | No hit | No description |
SuperFamily | SSF55455 | 4.71E-27 | 17 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-24 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.3E-18 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MASSSSMPAS STKKSKGRQK VKMQRMEKDS NRQVTFSKRR CGLFKKASEL CTLCGAEAAI 60 IVFSPGRKPF SFGHPSVDTV IKRFLLSTSL NPEEPEPENP TPQEVIEIID LNANLTILNR 120 ELENEKKKSK SINEVKKANS KKNWWDRELE EFSIGELIRL KTSLEELSKH VIELSKKVMI 180 YNSSIHVNQF PYMAAHYPPM MGCYDAAYVT PNPNVGFMGS RDGH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_B | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_I | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3kov_J | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_A | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_B | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_C | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_D | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_I | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
3p57_J | 4e-15 | 17 | 110 | 1 | 88 | Myocyte-specific enhancer factor 2A |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010690727.2 | 6e-79 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2C9VIS1 | 3e-51 | A0A2C9VIS1_MANES; Uncharacterized protein | ||||
STRING | XP_010690727.1 | 5e-71 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-37 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_011013-RA |