PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010882-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

Trihelix

Protein Properties

Length: 353aa MW: 40068.5 Da PI: 9.5098

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010882-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.4	5.2e-20	33	118	1	82
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +Wt++e+laLi+++++++ +lrr++l+ ++We+v++ + + +s+ qC++k+e+l+kry+++k++ ++ + s + ++f AHYPO_010882-RA 33 CWTQDETLALINVYQDKWYSLRRRNLRTADWEAVADEVnrrcPNQDTPKSSAQCRHKMEKLRKRYRAEKQRIGSLPPHISYNNRFF 118 8********************************9997777888999********************9998766666555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.1E-20	32	131	No hit	No description
PROSITE profile	PS50090	6.051	34	94	IPR017877	Myb-like domain
SMART	SM00595	3.8E-4	41	137	IPR006578	MADF domain

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MASPSPSDNP YPATDNPNPN PSPPTTRKFP APCWTQDETL ALINVYQDKW YSLRRRNLRT 60 ADWEAVADEV NRRCPNQDTP KSSAQCRHKM EKLRKRYRAE KQRIGSLPPH ISYNNRFFPP 120 SSWVFFDLMD TMEIGPVSRS GSVSGVVPVS INGNNSHDVN LLKDRDNLSM IQNGDFVKEE 180 KKEKNDLGKY FDEILMGMSM GKRVGSGSGS SSMKLKLKNP NRNHKDRYID EGDEGYDNDY 240 NKTGRNIVSG FMKRKFDNCG GGGGGEDWPS SKTKGVDAVV EEMAASIKLL AEGMVRMETM 300 KMEMMQDIEM KRMEMEMKKN EMMLESQHNI INALIQGLKK HNNKKVKVIQ QQ*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MASPSPSDNP YPATDNPNPN PSPPTTRKFP APCWTQDETL ALINVYQDKW YSLRRRNLRT  60
ADWEAVADEV NRRCPNQDTP KSSAQCRHKM EKLRKRYRAE KQRIGSLPPH ISYNNRFFPP  120
SSWVFFDLMD TMEIGPVSRS GSVSGVVPVS INGNNSHDVN LLKDRDNLSM IQNGDFVKEE  180
KKEKNDLGKY FDEILMGMSM GKRVGSGSGS SSMKLKLKNP NRNHKDRYID EGDEGYDNDY  240
NKTGRNIVSG FMKRKFDNCG GGGGGEDWPS SKTKGVDAVV EEMAASIKLL AEGMVRMETM  300
KMEMMQDIEM KRMEMEMKKN EMMLESQHNI INALIQGLKK HNNKKVKVIQ QQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841225.1	1e-100	trihelix transcription factor ASIL2-like
TrEMBL	A0A0K9QYJ4	1e-98	A0A0K9QYJ4_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	8e-31	Trihelix family protein

Link Out ? help Back to Top
Phytozome	AHYPO_010882-RA