PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010836-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 442aa    MW: 48697.8 Da    PI: 6.939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010836-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.4e-114974126
                     --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                     ++++ C +++rtG C yG +C+F+H+
  AHYPO_010836-RA 49 PGEPDCLYYLRTGSCGYGTNCRFNHP 74
                     5789*********************9 PP
2zf-CCCH391.4e-12110134327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +  C f+++tGtCkyG++Ck++H+p
  AHYPO_010836-RA 110 QTDCGFYMKTGTCKYGSSCKYHHPP 134
                      678********************97 PP
3zf-CCCH314.3e-10155179327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+f++rt  C++G+ CkF H++
  AHYPO_010836-RA 155 EKPCPFYMRTYACRFGSACKFDHPQ 179
                      689********************97 PP
4zf-CCCH30.27.8e-10289313327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C++f+  G CkyG++CkF+H++
  AHYPO_010836-RA 289 QPECKYFSSPGGCKYGSNCKFHHPK 313
                      799********************96 PP
5zf-CCCH27.94e-09330354226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++ +C +f+ +G CkyG++CkF H+
  AHYPO_010836-RA 330 GEDPCAHFRSYGNCKYGPTCKFDHP 354
                      789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.5E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8544876IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-85074IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-55375IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-45473IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7107134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.103107135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6110135IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-10110134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.2E-5113134IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5151180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.155152180IPR000571Zinc finger, CCCH-type
SMARTSM003560.0079154179IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8155179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.516286314IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-4287313IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-8289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-5290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-5292313IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-4328355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742328356IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7330354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.76E-5331355IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5333353IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSEIPENQTN AASVLPNGDI DKIQEGMSEM KIEEKEIGVE ELQKYPDRPG EPDCLYYLRT  60
GSCGYGTNCR FNHPLLPPKS AHNTSELPQR GQPECGTAQV TSVFPQREGQ TDCGFYMKTG  120
TCKYGSSCKY HHPPDRRGAG NVTLNTLGYP IRQEEKPCPF YMRTYACRFG SACKFDHPQP  180
ASFGTPLPMG STLPSNTTLY VGTPPASYAA TPIVPGPQTY MPVVYPPLQT PLTGQCWNTH  240
MGNFSSMPAS NMTRPNFVHN PMNQNEPITG APVNLLTKTV SNTVESRDQP ECKYFSSPGG  300
CKYGSNCKFH HPKETMAYIL GPHGFPLRPG EDPCAHFRSY GNCKYGPTCK FDHPIYVTSY  360
CFGIPSLPMV IPNSTEASQT KINQTKITDW IQKPEIVQDK KLQSSPSKSI DPPQEVRGDH  420
PDNSIVAAAV STSERPEDNF D*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688921.11e-171PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
STRINGXP_010688919.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.22e-87C3H family protein