PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_010780-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 20083 Da PI: 9.2474 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 34.3 | 7.8e-11 | 5 | 85 | 25 | 90 |
FAR1 25 ngeitkrtfvCskegkreeekkk...............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + ++ + Cs g r++ekk + +++r+ a trtgC+a+++ kk++ g +ev++ +l HnH+++ AHYPO_010780-RA 5 TSDVNEKYYLCSATGIRNTEKKVvketqshdtegtektKIRKERRMAITRTGCNACIRAKKNTFGLFEVIDHVLAHNHSMT 85 56688999***********9999999*******99977667778999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-8 | 5 | 85 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MKQVTSDVNE KYYLCSATGI RNTEKKVVKE TQSHDTEGTE KTKIRKERRM AITRTGCNAC 60 IRAKKNTFGL FEVIDHVLAH NHSMTRTQWN YRHRSERQMS DHKKEAIETM QLAGLQPMES 120 YRLLSAEAGG EYTIAHTVKD HLNFCHKLKM KKIDGGDANS VIEQIMPLAH KSECC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021770696.1 | 2e-50 | protein FAR1-RELATED SEQUENCE 5-like |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 7e-12 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_010780-RA |