PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_010751-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26261.7 Da PI: 7.9357 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 102.8 | 3.1e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++p+++r+++++sl+yeA+ r+ +Pv+Gavg++++++++++q AHYPO_010751-RA 2 SCNGCRVLRKGCSESCILRPCLqwidtPESQGHATVFVAKFFGRAGLMSFISNVPDSQRPALFQSLLYEACGRTVNPVSGAVGLLWTGNWHVCQ 95 6********************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ AHYPO_010751-RA 96 AAVETVLR 103 **998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.109 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-27 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR PCLQWIDTPE SQGHATVFVA KFFGRAGLMS FISNVPDSQR 60 PALFQSLLYE ACGRTVNPVS GAVGLLWTGN WHVCQAAVET VLRGGTLRPI PEFLIGAPAS 120 PVPATTDAAD DNSEILCPSR TNNTNAWRKQ ISASVTMIQQ QYQKNSQFSP PRFTNSKRRK 180 QDDDCHVTQL DLSLTPPPFL HAPPSQRPGT PSLNSEESAT TVSFESDNYY QPKTLNLFV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021751411.1 | 1e-146 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 8e-83 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A0K9Q7W4 | 1e-120 | A0A0K9Q7W4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010679613.1 | 1e-132 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-85 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_010751-RA |