PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010703-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GRAS
Protein Properties Length: 642aa    MW: 70724.1 Da    PI: 5.3129
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010703-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS320.43.8e-982676413374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + + e+A+a+s+g++ela ++L+rl   ++ +g++ qRl  ++ +AL +r +   +e++   p++e     s+++++a+  ++e+sP++kf+ l
  AHYPO_010703-RA 267 QIISEAATAISEGKNELAAEFLTRLARVSNVQGNSEQRLGYHMGNALCSRAFP--DEISP--PVRELY---SDDQTQAMYSLYEISPCFKFGLL 353
                      67789***********************************************9..55552..333333...7889999999************* PP

             GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                      +aN  +lea+ g+     +vH++Dfd+++G+Q+++Ll+a+ +R+        g+ +++iT v+    +++   e+++e L k+Ae+ g++++f+
  AHYPO_010703-RA 354 AANLVMLEAITGAqqegLKVHVVDFDVGHGGQYMNLLRAMHDRRamlgikeTGSNEMKITIVET-GMENRGVDESMKELLIKVAENYGISLKFE 446
                      **********9996666689*********************99988888877899*******99.4457888899******************* PP

             GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                       l + ++++l+ e+L ++ gEa++Vn++++l+r++desvs+e+ rd++L+ vk+lsP+ v++veqe++ n+++F++r+ e++ y+ alf+sle+
  AHYPO_010703-RA 447 RL-TLKITELTRESLGCEDGEAIVVNFAFMLYRVPDESVSIENLRDALLRRVKDLSPRAVTLVEQEMNGNTAPFMTRVNESCAYFGALFESLES 539
                      *5.889**************************************************************************************** PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdr 365
                      +l+ ++++r+ +E++ lg++  n+vaceg+er+er e ++kWr+r+++aGF+  +l+ ++a+++++ l+  +  + g++v+ee+g +  gWkdr
  AHYPO_010703-RA 540 TLAVDHSDRVRIEER-LGKKMANLVACEGRERVERAELFGKWRARMGMAGFELKHLNPNVAESIRAKLESAQsgNPGFTVKEENGGVAYGWKDR 632
                      ***************.*****************************************************99877889***************** PP

             GRAS 366 pLvsvSaWr 374
                      +Lv++SaWr
  AHYPO_010703-RA 633 TLVFASAWR 641
                      ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.003239619IPR005202Transcription factor GRAS
PfamPF035141.3E-95267641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MASGFSGDLF YGGNGSVNGR PSILSGFRQQ QQQQQQGLFD QQIAQRKAEF VTGKRSLSDF  60
QQHQILLHHQ QQQQHPFLNN QFNPNNNCLI PNNNLINPVQ DSHPGISSLG YSNFKQGSQP  120
ENFSGAVYSN LVSNNPVVAS KVEPNVEAHK FRNTLYELEK QLLCDDNEEE NDTVSVVTNS  180
EWSETFQTLM GSNGNLNPSP NTNPTPSPIA TNHACSSTSG NSNTNIISNN NNIISPSPTS  240
STSSCCSTSA PVPATQQAPA ETLTVKQIIS EAATAISEGK NELAAEFLTR LARVSNVQGN  300
SEQRLGYHMG NALCSRAFPD EISPPVRELY SDDQTQAMYS LYEISPCFKF GLLAANLVML  360
EAITGAQQEG LKVHVVDFDV GHGGQYMNLL RAMHDRRAML GIKETGSNEM KITIVETGME  420
NRGVDESMKE LLIKVAENYG ISLKFERLTL KITELTRESL GCEDGEAIVV NFAFMLYRVP  480
DESVSIENLR DALLRRVKDL SPRAVTLVEQ EMNGNTAPFM TRVNESCAYF GALFESLEST  540
LAVDHSDRVR IEERLGKKMA NLVACEGRER VERAELFGKW RARMGMAGFE LKHLNPNVAE  600
SIRAKLESAQ SGNPGFTVKE ENGGVAYGWK DRTLVFASAW R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-3128364121375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765055.10.0LOW QUALITY PROTEIN: scarecrow-like protein 8
TrEMBLA0A0K9RTG00.0A0A0K9RTG0_SPIOL; Uncharacterized protein
STRINGXP_010671651.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-107SCARECROW-like 8