PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010600-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 472aa    MW: 52496.6 Da    PI: 5.0973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010600-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14.1e-10149171426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      e C+ff r+GtCk+G +CkF+H+
  AHYPO_010600-RA 149 EDCSFFVRNGTCKFGMNCKFNHP 171
                      89********************8 PP
2zf-CCCH27.64.9e-09209231527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C++f r G Ck+G  CkF+H++
  AHYPO_010600-RA 209 DCKYFDRPGGCKFGKACKFNHSR 231
                      6********************95 PP
3zf-CCCH38.61.9e-12249273226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ++++C+f++r+G Ck+G++C+F+H+
  AHYPO_010600-RA 249 GEKECPFYMRNGSCKFGANCRFNHP 273
                      7899********************9 PP
4zf-CCCH24.93.5e-08377403127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C++f ++G Cky + CkF+H++
  AHYPO_010600-RA 377 PGQPECSYFVKNGNCKYKSACKFHHPK 403
                      5789*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.371145173IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4145172IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.18E-5147174IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7149171IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497204232IPR000571Zinc finger, CCCH-type
SMARTSM003560.013205231IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-7209231IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4210231IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.427247275IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-7247274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6248274IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10249273IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4253272IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-5376403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.126376404IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5378403IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-5381403IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.23423435IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MELGLQSSSS SSIACPLGLS IHQNNLQITS VESDSPSSPS HDHDHDHHQS SESVDDELTS  60
LSIHDTKVEA DDNGGGDCDR RSEDREDENN EEEKGELEDE TNEETENGVE EEGNGEIENA  120
IKNEEREKDL SRRKSNNNTS RFPLRPDAED CSFFVRNGTC KFGMNCKFNH PSNHRKYQGV  180
KVKVKEESAE SASQKVKEND ESLQKEQIDC KYFDRPGGCK FGKACKFNHS RKTNSTFTLN  240
FMGLPIRPGE KECPFYMRNG SCKFGANCRF NHPDPTSFGG PDALPKYGNG GSVYSPNVSQ  300
STVPSWSPPP ALNESPPYVS MIFPPTQGVP MQPEWNAYQA QVYQPQRSMH LPPTYTMNNQ  360
LPERPEQMLG DDFPERPGQP ECSYFVKNGN CKYKSACKFH HPKRVMAESP SCHLSDLGLP  420
LRPYGPACKY DHPINHVHSP DLSVSEAEVD QTPVLGDSRV NNQAIAMAAS S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021762041.10.0zinc finger CCCH domain-containing protein 43-like
RefseqXP_021762042.10.0zinc finger CCCH domain-containing protein 43-like
TrEMBLA0A0J8B6J50.0A0A0J8B6J5_BETVU; Uncharacterized protein
STRINGXP_010667394.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.12e-92C3H family protein