PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010561-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family M-type_MADS
Protein Properties Length: 316aa    MW: 34841.1 Da    PI: 8.7261
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010561-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.3e-161050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                      ie++s r+ t+ kR +g++KKA+EL +LC++e++ i++++
  AHYPO_010561-RA 10 LIEDNSSRKATYKKRNKGLMKKANELTTLCGVEACAILYGP 50
                     59*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.563149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-23294IPR002100Transcription factor, MADS-box
CDDcd002661.90E-29283No hitNo description
PRINTSPR004049.1E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.8E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004049.1E-92338IPR002100Transcription factor, MADS-box
SuperFamilySSF503861.85E-27146305IPR011065Kunitz inhibitor ST1-like
Gene3DG3DSA:2.80.10.502.4E-26148305No hitNo description
SMARTSM004526.7E-17148306IPR002160Proteinase inhibitor I3, Kunitz legume
PfamPF001971.9E-22149304IPR002160Proteinase inhibitor I3, Kunitz legume
PROSITE patternPS002830149165IPR002160Proteinase inhibitor I3, Kunitz legume
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0004866Molecular Functionendopeptidase inhibitor activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTRNKVKLEL IEDNSSRKAT YKKRNKGLMK KANELTTLCG VEACAILYGP YDPQPEVWPN  60
PRGVNHVLKR FKNFTKEEQG KNMFDQESYL KMRIAKTTQL LEKLRNHNKE MEINEVIFKC  120
LSGEKCIEDL NLQETIDLSL LISGNNAQIT DTDGDLLRNG GKYFILPRDI NVNGGLTIAS  180
PCPYYITRSK YEIHPGIPVT ISSPFKIGVI PPGLPISISF DFIIIDTCMQ SLTWQVIADE  240
STGKSYVRTG GSGLSANFSI FGSGAGGSYK IIYNKADGGE VGFFEKDGLL GINTESSVPV  300
VFKKAGFSNG IAMKV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021771891.14e-59agamous-like MADS-box protein AGL80
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.14e-40AGAMOUS-like 38