PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_010449-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 331aa MW: 37385.7 Da PI: 5.4533

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_010449-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.1	1.7e-53	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d yk++Pw+Lp k + +++ ew+fF++rdkky++g+r+nrat++gyWkatgkd++v AHYPO_010449-RA 6 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-EVIPVIDFYKFDPWELPdKsFLPKRDMEWFFFCPRDKKYPNGSRTNRATRAGYWKATGKDRKV 98 79**************************.99**********96434556788******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +++ +g +ktLvfy+grap g++tdWvmheyrl AHYPO_010449-RA 99 VC-ESSITGYRKTLVFYQGRAPLGSRTDWVMHEYRL 133 .9999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-59	4	153	IPR003441	NAC domain
PROSITE profile	PS51005	57.946	6	153	IPR003441	NAC domain
Pfam	PF02365	1.0E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008283	Biological Process	cell proliferation
GO:0071365	Biological Process	cellular response to auxin stimulus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGGATLPPGF RFHPTDEELV GYYLKRKVEG LEIELEVIPV IDFYKFDPWE LPDKSFLPKR 60 DMEWFFFCPR DKKYPNGSRT NRATRAGYWK ATGKDRKVVC ESSITGYRKT LVFYQGRAPL 120 GSRTDWVMHE YRLCDDMAPN SQGAFALCRV VKKSGFNEDV KGKRAGSSSS KKELISTEVS 180 HEPLSISGEY QYNSSNYSTP ISSPYITPRA DFETTASMTS QSQSTWISSE FILDSSKDYT 240 QGRGISSDYF PQCDIQNPMA ASWQPYQQQG ISPSSSYSTF TEIEHVDDLS RIGCISPYST 300 HMDYIGLDGN VGVLYDGYDP INPLSYQNPF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-51	5	153	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-51	5	153	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-51	5	153	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-51	5	153	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-51	5	153	19	168	NAC domain-containing protein 19
3swm_B	2e-51	5	153	19	168	NAC domain-containing protein 19
3swm_C	2e-51	5	153	19	168	NAC domain-containing protein 19
3swm_D	2e-51	5	153	19	168	NAC domain-containing protein 19
3swp_A	2e-51	5	153	19	168	NAC domain-containing protein 19
3swp_B	2e-51	5	153	19	168	NAC domain-containing protein 19
3swp_C	2e-51	5	153	19	168	NAC domain-containing protein 19
3swp_D	2e-51	5	153	19	168	NAC domain-containing protein 19
4dul_A	1e-51	5	153	16	165	NAC domain-containing protein 19
4dul_B	1e-51	5	153	16	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269\|PubMed:21911380, ECO:0000269\|PubMed:25182467, ECO:0000269\|PubMed:27986917}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00439	DAP	Transfer from AT4G17980	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269\|PubMed:21911380}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021768141.1	0.0	NAC domain-containing protein 71-like
Swissprot	O49697	1e-101	NAC71_ARATH; NAC domain-containing protein 71
TrEMBL	A0A1B2RWB9	0.0	A0A1B2RWB9_9CARY; NAC transcription factor 16
STRING	XP_010677286.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17980.1	2e-98	NAC domain containing protein 71

Link Out ? help Back to Top
Phytozome	AHYPO_010449-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Asahina M,Satoh S Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues. J. Plant Res., 2015. 128(3): p. 381-8 [PMID:25736731] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]