PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_010179-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18315.6 Da PI: 5.0366 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 5.9e-12 | 27 | 74 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 +h+ +Er RR+ri +++ L++l+P++ +K K++iL ++Y++sLq AHYPO_010179-RA 27 SHSLAERVRRQRISDKMKVLQSLVPEC-----EKmTGKVQILDNIINYVHSLQ 74 8*************************9.....5669****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.33E-16 | 21 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.916 | 23 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-16 | 26 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-9 | 27 | 74 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.46E-10 | 27 | 78 | No hit | No description |
SMART | SM00353 | 3.8E-10 | 29 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MTVHDEGGRR DDEYVYLRAK RGQTINSHSL AERVRRQRIS DKMKVLQSLV PECEKMTGKV 60 QILDNIINYV HSLQDHVKTL MEELALVDPT FNFNYLTERP VAIQTEESLA TSADSECSKI 120 ASQSYAGGYD QSICLHESSN AYMSAPLSPW LALLEDREYT I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010682661.1 | 6e-58 | PREDICTED: transcription factor BEE 2 | ||||
Swissprot | Q9C670 | 3e-27 | BH076_ARATH; Transcription factor bHLH76 | ||||
TrEMBL | I6MJ73 | 1e-39 | I6MJ73_BETVU; Putative cryptochrome-interacting basic helix-loop-helix 5 (Fragment) | ||||
STRING | XP_010682661.1 | 2e-57 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26260.3 | 7e-30 | cryptochrome-interacting basic-helix-loop-helix 5 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_010179-RA |
Publications ? help Back to Top | |||
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