PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009963-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 210aa MW: 23447.7 Da PI: 9.0309

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009963-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.5	1.5e-33	55	109	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl AHYPO_009963-RA 55 KPRLRWTADLHERFVDAVTQLGGPHKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 109 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.051	52	112	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.7E-32	52	110	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.63E-16	55	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-24	55	110	IPR006447	Myb domain, plants
Pfam	PF00249	4.2E-8	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MYPRFIQPHH HSQQHQQLHE SIGVIVGPID DIHQVGPTTT TSAGDPRLVL TSDPKPRLRW 60 TADLHERFVD AVTQLGGPHK ATPKAIMRTM GVKGLTLFHL KSHLQKYRLG KQSGKDMGEP 120 PKDGISASYH LESPRTSNSS SSLPTSDMDE GFKVKEALRT QMEAEKHLQM RQDAERRYMA 180 MLERACKILA DQLMGVAITE NHAQSTLQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-19	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-19	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-19	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-19	55	111	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021724784.1	1e-120	protein PHR1-LIKE 2-like isoform X2
Swissprot	Q94A57	2e-54	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A0K9RJS6	1e-116	A0A0K9RJS6_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010673278.1	1e-119	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	5e-54	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009963-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]