PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009703-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 350aa    MW: 39261.9 Da    PI: 6.9108
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009703-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B397.86.8e-3191203199
                      EEEE-..-HHHHTT-EE--HHH.HTT..............---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                      f+k ltpsdv+k++rlv+pk++ae++              +   +   +++ l +edesg+ W+++++y+++s++yvltkGW+++vk+++L++g
  AHYPO_009703-RA  91 FEKPLTPSDVGKLNRLVIPKQHAEKYfplagdssvvdktnN---PgagGGVLLAFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKEKKLDAG 181
                      99***************************999888876652...1344899******************************************* PP

                      -EEEEEE-SSSEE..EEEEE-S CS
               B3  78 DfvvFkldgrsefelvvkvfrk 99 
                      D+v F++++ ++ +++++++r+
  AHYPO_009703-RA 182 DVVFFERSRFESDRFFIGWRRR 203
                      ******865588889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-3983209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.37E-3088202IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-2690193No hitNo description
PROSITE profilePS5086313.18391204IPR003340B3 DNA binding domain
SMARTSM010193.7E-2491204IPR003340B3 DNA binding domain
PfamPF023625.6E-2891203IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MNHLSLNSDT LWYTPTTMEP PHHHHQKSLP FFYNPSSLSL SSSFRYDDVE SDNSTTNNNN  60
NHNTHSLING GIDRSETTSS SPSSIDHEYM FEKPLTPSDV GKLNRLVIPK QHAEKYFPLA  120
GDSSVVDKTN NPGAGGGVLL AFEDESGKCW KFRYSYWNSS QSYVLTKGWS RYVKEKKLDA  180
GDVVFFERSR FESDRFFIGW RRRGSAPTHT APVQFSNTQN YGAVHSQGYN GAPQQHQISP  240
FFHAGTEVRQ HGVKGKKSGG GNSKSVRLFG VNLECQIEEE IEEEEPQTSD NGSSLSSQNQ  300
GGSLSGLGLG PTAYNYFDYV GYPPNHHHYT SHMDMNFTQD VNQMRNRLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-45862033113B3 domain-containing transcription factor NGA1
5os9_B1e-45862033113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021765456.11e-144B3 domain-containing protein At2g36080-like isoform X1
SwissprotQ9FNI34e-63Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A0K9RLB11e-136A0A0K9RLB1_SPIOL; Uncharacterized protein
STRINGXP_010683640.11e-119(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.21e-53B3 family protein