PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_009690-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | NAC | ||||||||
Protein Properties | Length: 356aa MW: 40255.8 Da PI: 8.3394 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.4 | 2.4e-22 | 13 | 87 | 56 | 127 |
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127 +ew+fF++++kk+a g r+nr t++gyWkatg+ v+s+ +++ +g+k+t+vfy+g r+++g+kt+W ++ey AHYPO_009690-RA 13 QEWFFFIPKQKKEAAGGRPNRLTDTGYWKATGSPGFVYSStENKIIGVKRTMVFYNGraRSRSGSKTEWKINEYV 87 69************************************9967778**********763367889**********6 PP | |||||||
2 | NAM | 72.5 | 1.1e-22 | 118 | 194 | 54 | 127 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykg..rapkgektdWvmheyr 127 + +ew+fF++++kk+a g r+nr t++gyWkatg+ v+s+ +++ +g+k+t+vfy+g r+++g+kt+W ++ey AHYPO_009690-RA 118 QLQEWFFFIPKQKKEAAGGRPNRLTDTGYWKATGSPGFVYSStENKIIGVKRTMVFYNGraRSRSGSKTEWKINEYV 194 4469************************************9967778**********763367889**********6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 7.173 | 1 | 44 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-10 | 10 | 87 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.03E-21 | 14 | 94 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.663 | 44 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-11 | 116 | 194 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-25 | 120 | 225 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
LSGEKCRGDP QLQEWFFFIP KQKKEAAGGR PNRLTDTGYW KATGSPGFVY SSTENKIIGV 60 KRTMVFYNGR ARSRSGSKTE WKINEYVAVD DDYDQASSST NPPPSVNLSG EKCRGDPQLQ 120 EWFFFIPKQK KEAAGGRPNR LTDTGYWKAT GSPGFVYSST ENKIIGVKRT MVFYNGRARS 180 RSGSKTEWKI NEYVAVDDDY DQASSSTNPP PSQKGDFTVC RVYIKSKCLR AFDRRPAAPP 240 INRSQPLITR HHRDDHQPSS SNHHHHQDEQ TDPQARAQIV RCISSDSSSS SGDNQAANNN 300 NNNNNNNNNN NIINNNPSEN YNSYSNNMNM DIDEQETPVW DCDWDWTNWS FSNFS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-17 | 13 | 225 | 63 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-17 | 13 | 225 | 63 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-17 | 13 | 225 | 63 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-17 | 13 | 225 | 63 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-16 | 13 | 225 | 66 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-17 | 13 | 225 | 63 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-17 | 13 | 225 | 63 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010683676.1 | 2e-93 | PREDICTED: NAC domain-containing protein 90 | ||||
TrEMBL | A0A0K9R252 | 1e-84 | A0A0K9R252_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683676.1 | 9e-93 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44350.2 | 3e-43 | NAC domain containing protein 61 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_009690-RA |