PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009600-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NF-YA

Protein Properties

Length: 295aa MW: 31788.9 Da PI: 6.8401

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009600-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.8	6.4e-32	172	228	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF AHYPO_009600-RA 172 QEPVYVNAKQYHGILRRRQVRAKAELERKL-IKIRKPYLHESRHQHALRRARGTGGRF 228 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-35	170	231	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.071	171	231	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.7E-26	173	228	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.8E-24	174	196	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	176	196	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.8E-24	205	228	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MPSKSISTNQ AAPSAATTTT TTEHWWQAAG PGPFPSTGTS ANAPNHPLLI HSVEMLGSKD 60 DQSLSNAADD EDETSKDSET TGSTSTPHDS TSGHEVHKSQ YGESSMTLGS ADYYAQHPQL 120 ELIGHSIACA STPYPDLYYG GMMAAYGPQP LVPPQFYGMH QPRMPLPLEM AQEPVYVNAK 180 QYHGILRRRQ VRAKAELERK LIKIRKPYLH ESRHQHALRR ARGTGGRFAK KGENEGSSHS 240 ADERNKISDA GEAHEEHADI SNGSGGTRAG ASQTNQQWGS SMSTDKAPQC ALAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-18	172	242	2	71	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010673645.1	1e-176	PREDICTED: nuclear transcription factor Y subunit A-1
Swissprot	Q945M9	2e-51	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A0K9RHN0	1e-149	A0A0K9RHN0_SPIOL; Uncharacterized protein
STRING	XP_010673645.1	1e-176	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	5e-53	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	AHYPO_009600-RA

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]