PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009543-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 516aa    MW: 57715.7 Da    PI: 7.0249
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009543-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.41.2e-35511931128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....... 79 
                      lp+G++F+Ptd+el+ e+L++kvegk+      ++++  +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++       
  AHYPO_009543-RA  51 LPAGVKFDPTDQELI-EHLEAKVEGKSskshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqg 142
                      799************.99********96665443333333666646**********.555666799******************7333455554 PP

              NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       + +W++tgk+++vl  +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  AHYPO_009543-RA 143 gETRWHKTGKTRPVLL-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 193
                      4778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3846212IPR003441NAC domain
PROSITE profilePS5100532.66851212IPR003441NAC domain
PfamPF023652.9E-1652193IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MNTSNKTQLS SISSASDLID AKLEEHQLCG SKQCPGCGHK LEGSKPDWVG LPAGVKFDPT  60
DQELIEHLEA KVEGKSSKSH PLIDEFIPTI EGEDGICYTH PEKLPGVTRD GLSRHFFHRP  120
SKAYTTGTRK RRKIQTECDL QGGETRWHKT GKTRPVLLNG KQKGCKKILV LYTNFGKNRK  180
PEKTNWVMHQ YHLGQHEEEK EGELVVSKIF YQTQPRQCTW TSERTATTGD GGNEPTSGRR  240
ESGSGSGSGS TSSSKELIIH PNRDDHHNIS ISAGVSVGAL SSFTALDMQH FRAGTEQFSY  300
VPFGRKPFDE VGIRDATTIV SRETAALPST CDDHEPRPQQ HHHQHHQQYQ HQHHQHVHHP  360
HPMNVPQDHH HHTQQGIATT AAFHMSTPSH PLSQIIAPPP FHHASIILDD DSFQHVSRIM  420
HLQNHSFHQQ HQHEQQQQQH DQTQEQQHHK IVGRSAAGLE EIIMACTSSA SVSAPSSAGE  480
IKEQESSITN PPPSEAEWIK FPSFWHDPDH SDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010688374.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
RefseqXP_010688375.10.0PREDICTED: NAC domain-containing protein 35 isoform X2
RefseqXP_019107023.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
RefseqXP_019107024.10.0PREDICTED: NAC domain-containing protein 35 isoform X1
SwissprotQ9M0F81e-167NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0K9Q9050.0A0A0K9Q905_SPIOL; Uncharacterized protein
STRINGXP_010688374.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-150NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]