PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009460-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 461aa MW: 50643.6 Da PI: 6.0056

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009460-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102	3.8e-32	236	290	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFveav+ L G+ekAtPk +l+lm+++g+t++hvkSHLQkYRl AHYPO_009460-RA 236 KTRMRWTPELHERFVEAVNTLDGPEKATPKGVLKLMNIEGITIYHVKSHLQKYRL 290 68****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.79E-17	235	290	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-29	235	291	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-24	236	291	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-8	238	289	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-22	326	371	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MNHSGKTSLP ASDSSKGMTE YSNALPPFDF SCIEACQGSV SSESSYPFLK QSEKLKSSSG 60 SGEFLLSSSE AHLKSAHSRS SMFCTNLYLS SSTSSEAQRQ LGNLPFLPSP YTPRSNKTQL 120 FPNDDADSLC KQKHSEDSFK DFYPGSISDD EFDDVTCGSD SLALSEQLEL QLLSDELHLA 180 MTDNGENPGI DEIYNASPVA SKPVIVSTVP NDALPVPPSI NAISSHKAPA AGACHKTRMR 240 WTPELHERFV EAVNTLDGPE KATPKGVLKL MNIEGITIYH VKSHLQKYRL AKFIPEKKEE 300 KKPSNLNEKR THLSTKDSDA LKKGSITEAL RMQMEVQKQL HEQLEVQRAL QVRIEEHARY 360 LQKILEEQQK AQTAIVSSQS LSSVTSEEPE VEPCPASSSI SPESLPNKQT ESKSNPSSPL 420 PSKHTNDDSA SQPCLKKPRL EDEAKRDRPL DVPPLVHNSL *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MNHSGKTSLP ASDSSKGMTE YSNALPPFDF SCIEACQGSV SSESSYPFLK QSEKLKSSSG  60
SGEFLLSSSE AHLKSAHSRS SMFCTNLYLS SSTSSEAQRQ LGNLPFLPSP YTPRSNKTQL  120
FPNDDADSLC KQKHSEDSFK DFYPGSISDD EFDDVTCGSD SLALSEQLEL QLLSDELHLA  180
MTDNGENPGI DEIYNASPVA SKPVIVSTVP NDALPVPPSI NAISSHKAPA AGACHKTRMR  240
WTPELHERFV EAVNTLDGPE KATPKGVLKL MNIEGITIYH VKSHLQKYRL AKFIPEKKEE  300
KKPSNLNEKR THLSTKDSDA LKKGSITEAL RMQMEVQKQL HEQLEVQRAL QVRIEEHARY  360
LQKILEEQQK AQTAIVSSQS LSSVTSEEPE VEPCPASSSI SPESLPNKQT ESKSNPSSPL  420
PSKHTNDDSA SQPCLKKPRL EDEAKRDRPL DVPPLVHNSL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-26	236	293	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00354	DAP	Transfer from AT3G13040	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010696145.1	0.0	PREDICTED: myb family transcription factor PHL6
Swissprot	Q949U2	1e-110	PHL6_ARATH; Myb family transcription factor PHL6
TrEMBL	A0A0K9QTS5	0.0	A0A0K9QTS5_SPIOL; Uncharacterized protein
STRING	XP_010696145.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	6e-89	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009460-RA

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nguyen HT, et al. A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2. Plant Cell Physiol., 2016. 57(4): p. 784-97 [PMID:26872838]