PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_009460-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | G2-like | ||||||||
Protein Properties | Length: 461aa MW: 50643.6 Da PI: 6.0056 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 236 | 290 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHerFveav+ L G+ekAtPk +l+lm+++g+t++hvkSHLQkYRl AHYPO_009460-RA 236 KTRMRWTPELHERFVEAVNTLDGPEKATPKGVLKLMNIEGITIYHVKSHLQKYRL 290 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-17 | 235 | 290 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-29 | 235 | 291 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-24 | 236 | 291 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-8 | 238 | 289 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-22 | 326 | 371 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MNHSGKTSLP ASDSSKGMTE YSNALPPFDF SCIEACQGSV SSESSYPFLK QSEKLKSSSG 60 SGEFLLSSSE AHLKSAHSRS SMFCTNLYLS SSTSSEAQRQ LGNLPFLPSP YTPRSNKTQL 120 FPNDDADSLC KQKHSEDSFK DFYPGSISDD EFDDVTCGSD SLALSEQLEL QLLSDELHLA 180 MTDNGENPGI DEIYNASPVA SKPVIVSTVP NDALPVPPSI NAISSHKAPA AGACHKTRMR 240 WTPELHERFV EAVNTLDGPE KATPKGVLKL MNIEGITIYH VKSHLQKYRL AKFIPEKKEE 300 KKPSNLNEKR THLSTKDSDA LKKGSITEAL RMQMEVQKQL HEQLEVQRAL QVRIEEHARY 360 LQKILEEQQK AQTAIVSSQS LSSVTSEEPE VEPCPASSSI SPESLPNKQT ESKSNPSSPL 420 PSKHTNDDSA SQPCLKKPRL EDEAKRDRPL DVPPLVHNSL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-26 | 236 | 293 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00354 | DAP | Transfer from AT3G13040 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010696145.1 | 0.0 | PREDICTED: myb family transcription factor PHL6 | ||||
Swissprot | Q949U2 | 1e-110 | PHL6_ARATH; Myb family transcription factor PHL6 | ||||
TrEMBL | A0A0K9QTS5 | 0.0 | A0A0K9QTS5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010696145.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13040.2 | 6e-89 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_009460-RA |
Publications ? help Back to Top | |||
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