PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_009402-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family HB-other
Protein Properties Length: 625aa    MW: 71101.8 Da    PI: 9.4776
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_009402-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.94.5e-104154581053
                      HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
         Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                      e l+ L + F++n  ps++ ++++++ +gL+ ++V  WF+N R+
  AHYPO_009402-RA 415 EALQKLRQSFAENELPSRDVKRRISELVGLEYKKVNKWFKNARY 458
                      7899**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-11399457IPR009057Homeodomain-like
PROSITE profilePS5007112.455403463IPR001356Homeobox domain
SuperFamilySSF466893.55E-10405471IPR009057Homeodomain-like
SMARTSM003892.8E-8405467IPR001356Homeobox domain
CDDcd000862.81E-7406464No hitNo description
PfamPF000461.5E-7415458IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MKTLAQMRNS VLKKLNKRRK LKFSSSVLSS GSKSLKTSDK KRKAETARRN LFCRVIDTLE  60
KHDHEGCQGD QSLCSSSKGK IDGGKPLTVS LKRRRKPKKK KVKVVPDEAA QLQRRARYLL  120
VKMKLEQNLI DAYSGEGWKG QSREKIKPEK ELQRAKNQIH KCKLGIRDTL HQLDLLGSVG  180
QIDEALIAPD GSVHHEHVEI LDALNAHLGT LFSADTPWQD IFKEEALLSN VGTEDANLEE  240
KWPDDESDDN DYDPDRDEYD STNRCSMEDV DSHAETSTSS SCCSLESEVL SESGFSAAGG  300
VVSSKIASLH QTCVVEFNNN EIATGPRKRC VVDYKKLYDE MFGKEKENSN GFFSEDEDWN  360
PSKRRRREKE NDVANTLMSL REIEVKKPDP PTSDVGDNHL PCAKARKPLS RIPCEALQKL  420
RQSFAENELP SRDVKRRISE LVGLEYKKVN KWFKNARYMA LKNKKRERVS DNSIIGFAVN  480
KSAEVTLTKF SSTPISTHKK KRRVSWKDNL ITFINIPKKQ QTKETLHVSN TANVEPSDDM  540
CLKKHLLYLK ASKQRKSVKH DIEQPQESNV EQQMEDLCRI QEKLWKLKQV LSTIPEIVTK  600
ESEEVSLNGQ IVVYVPVARL KEKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117LKKLNKR
23442LKTSDKKRK
39096LKRRRKP
4363368RRRREK
5498502KKKRR
6498503KKKRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671751.10.0PREDICTED: pathogenesis-related homeodomain protein
TrEMBLA0A0K9S1620.0A0A0K9S162_SPIOL; Uncharacterized protein
STRINGXP_010671751.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.22e-36pathogenesis related homeodomain protein A