PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_009402-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | HB-other | ||||||||
Protein Properties | Length: 625aa MW: 71101.8 Da PI: 9.4776 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.9 | 4.5e-10 | 415 | 458 | 10 | 53 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 e l+ L + F++n ps++ ++++++ +gL+ ++V WF+N R+ AHYPO_009402-RA 415 EALQKLRQSFAENELPSRDVKRRISELVGLEYKKVNKWFKNARY 458 7899**************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-11 | 399 | 457 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.455 | 403 | 463 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.55E-10 | 405 | 471 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.8E-8 | 405 | 467 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.81E-7 | 406 | 464 | No hit | No description |
Pfam | PF00046 | 1.5E-7 | 415 | 458 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MKTLAQMRNS VLKKLNKRRK LKFSSSVLSS GSKSLKTSDK KRKAETARRN LFCRVIDTLE 60 KHDHEGCQGD QSLCSSSKGK IDGGKPLTVS LKRRRKPKKK KVKVVPDEAA QLQRRARYLL 120 VKMKLEQNLI DAYSGEGWKG QSREKIKPEK ELQRAKNQIH KCKLGIRDTL HQLDLLGSVG 180 QIDEALIAPD GSVHHEHVEI LDALNAHLGT LFSADTPWQD IFKEEALLSN VGTEDANLEE 240 KWPDDESDDN DYDPDRDEYD STNRCSMEDV DSHAETSTSS SCCSLESEVL SESGFSAAGG 300 VVSSKIASLH QTCVVEFNNN EIATGPRKRC VVDYKKLYDE MFGKEKENSN GFFSEDEDWN 360 PSKRRRREKE NDVANTLMSL REIEVKKPDP PTSDVGDNHL PCAKARKPLS RIPCEALQKL 420 RQSFAENELP SRDVKRRISE LVGLEYKKVN KWFKNARYMA LKNKKRERVS DNSIIGFAVN 480 KSAEVTLTKF SSTPISTHKK KRRVSWKDNL ITFINIPKKQ QTKETLHVSN TANVEPSDDM 540 CLKKHLLYLK ASKQRKSVKH DIEQPQESNV EQQMEDLCRI QEKLWKLKQV LSTIPEIVTK 600 ESEEVSLNGQ IVVYVPVARL KEKE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 11 | 17 | LKKLNKR |
2 | 34 | 42 | LKTSDKKRK |
3 | 90 | 96 | LKRRRKP |
4 | 363 | 368 | RRRREK |
5 | 498 | 502 | KKKRR |
6 | 498 | 503 | KKKRRV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010671751.1 | 0.0 | PREDICTED: pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A0K9S162 | 0.0 | A0A0K9S162_SPIOL; Uncharacterized protein | ||||
STRING | XP_010671751.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 2e-36 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_009402-RA |