PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009329-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 946aa MW: 100999 Da PI: 4.1994

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009329-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00066	23	45	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +F++++ +H r H AHYPO_009329-RA 23 HVCHKCGWPFPNPHPSAKHRRAH 45 79*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	25	45	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
METQDHRTPK QSGHEGHSGG GAHVCHKCGW PFPNPHPSAK HRRAHKKVCG SLEGYMLDND 60 APEKTQLMDG EHVSDDECKT PSGKVVENVI SRRSSSGVGS RSSRSNRSEE ELFADAVTDF 120 ADGSGHGEAS DGVIQRFYSL QSVTENDISD TTVTAENGDN LHASKDGQDE LQTEDGTLSQ 180 NYISSSSTGP AIVSTAEEKE SKFELETEQS SKTSHVLNIV AVEREEIVSS KDKSDLATSY 240 NETAEVVSKY VSALRAGDNE IQSSVAIGEI AKSTEMLAGS SEVNADFSEV VDVPSNFSPF 300 ENPVQIIDPA NGIINKSRDV IEDDVSMAET YNVDVQSVPK ALPMHKDPEA TVEDVGLNRG 360 DIDTLNALGA VTYAAEEVVS GNDVAEVGDS KNIRREDNVV GSVENTENDF KQDLGQKSID 420 DFGTVGMPSQ IPEFEASDPG VSEVKSEVIT QFETKCLESD KIRSAEEQKP TISSENVSPE 480 VNSAAADNLE YASTGAANTS NDIDDGTEHV LLEIKDRELT EKDLSEEQKN PIPLENASPE 540 LVSAVADNGT NNEVNNGTED VQLEIQDREL TGKGLSGSSS VDECAINDIP PLIKEPRNDD 600 RISGGVQIHL DENEMRSAGE DNDVVNAETI PGCQLSTENV HEPLEHEKTS DHGKSETITG 660 SGDLMVGGSL PKMECTGGSS GGGEYVKCSE EASGVAGDML TKQLVAGSAV DVVPDSSSQT 720 DSLDGNWGSV SVMSAISDTP PAVDTPASNE SCASIAKANA TLEPKPVTES QQPESKTSAE 780 PYDGIRKTEG ISEIQTLEEQ QPTGSALQTA WSSSVAHAEN ASHGGTRDEI ITKVTNWSTE 840 KQHTALKTLL GEATARSRAE SPIHPNQSST SEPQTDEIPA ANNGFSKTEN SDPSSTKPTA 900 EKSEEMGKEW NSPARYPVNI KTEKKRSRSK LYWAPFLCCS SVNAR*

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

METQDHRTPK QSGHEGHSGG GAHVCHKCGW PFPNPHPSAK HRRAHKKVCG SLEGYMLDND  60
APEKTQLMDG EHVSDDECKT PSGKVVENVI SRRSSSGVGS RSSRSNRSEE ELFADAVTDF  120
ADGSGHGEAS DGVIQRFYSL QSVTENDISD TTVTAENGDN LHASKDGQDE LQTEDGTLSQ  180
NYISSSSTGP AIVSTAEEKE SKFELETEQS SKTSHVLNIV AVEREEIVSS KDKSDLATSY  240
NETAEVVSKY VSALRAGDNE IQSSVAIGEI AKSTEMLAGS SEVNADFSEV VDVPSNFSPF  300
ENPVQIIDPA NGIINKSRDV IEDDVSMAET YNVDVQSVPK ALPMHKDPEA TVEDVGLNRG  360
DIDTLNALGA VTYAAEEVVS GNDVAEVGDS KNIRREDNVV GSVENTENDF KQDLGQKSID  420
DFGTVGMPSQ IPEFEASDPG VSEVKSEVIT QFETKCLESD KIRSAEEQKP TISSENVSPE  480
VNSAAADNLE YASTGAANTS NDIDDGTEHV LLEIKDRELT EKDLSEEQKN PIPLENASPE  540
LVSAVADNGT NNEVNNGTED VQLEIQDREL TGKGLSGSSS VDECAINDIP PLIKEPRNDD  600
RISGGVQIHL DENEMRSAGE DNDVVNAETI PGCQLSTENV HEPLEHEKTS DHGKSETITG  660
SGDLMVGGSL PKMECTGGSS GGGEYVKCSE EASGVAGDML TKQLVAGSAV DVVPDSSSQT  720
DSLDGNWGSV SVMSAISDTP PAVDTPASNE SCASIAKANA TLEPKPVTES QQPESKTSAE  780
PYDGIRKTEG ISEIQTLEEQ QPTGSALQTA WSSSVAHAEN ASHGGTRDEI ITKVTNWSTE  840
KQHTALKTLL GEATARSRAE SPIHPNQSST SEPQTDEIPA ANNGFSKTEN SDPSSTKPTA  900
EKSEEMGKEW NSPARYPVNI KTEKKRSRSK LYWAPFLCCS SVNAR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021860699.1	0.0	uncharacterized protein LOC110799730
TrEMBL	A0A0K9RL74	0.0	A0A0K9RL74_SPIOL; Uncharacterized protein
STRING	XP_010673367.1	0.0	(Beta vulgaris)

Link Out ? help Back to Top
Phytozome	AHYPO_009329-RA