PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_009300-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

G2-like

Protein Properties

Length: 265aa MW: 29570.4 Da PI: 7.569

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_009300-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	56	110	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl AHYPO_009300-RA 56 KPRLRWTADLHERFVDAVTQLGGPHKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 110 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-31	53	111	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.051	53	113	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-16	56	112	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.7E-24	56	111	IPR006447	Myb domain, plants
Pfam	PF00249	6.2E-8	58	109	IPR001005	SANT/Myb domain
Pfam	PF14379	8.0E-16	154	198	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MYPRFIQPHH HNQQHQQQLH ESLGVMAGPI DEIHQVGPTT TTSAGDPRLV LTSDPKPRLR 60 WTADLHERFV DAVTQLGGPH KATPKAIMRT MGVKGLTLFH LKSHLQKYRL GKQSGKDMGE 120 TPKDGMSASY HLESPRTSNS SSSLPTPDMD EGFKVKEALR TQMEVQTKLH LQVEAEKHLQ 180 IRQDAERRYM AMLERACKIL TDQLVGVSIT EGHGQHTLQG QASEIVYTLQ NHTLSSRLNS 240 PTDEMPASLN PHHRDDCSAE SCLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-17	56	112	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021724783.1	1e-128	protein PHR1-LIKE 2-like isoform X1
TrEMBL	A0A0K9RJS6	1e-123	A0A0K9RJS6_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010673278.1	1e-125	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	AHYPO_009300-RA